Sequence
atgc intronic sequence ATGC exonic sequenceAGCGACGTGGAACACAAAACTGATGCCAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAAGCTTGGGAGGATCCTATCCTTGCGGAGTGGCCAGAAGgtattatgatgtagtcattcctatttagtatttactgattcgttaatttaattttatgtatattgaaagtttgcttgtgttgtgaaagaccatctattat...
Basic information
species | Glycine max |
transcript | GLYMA20G36570.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 2
AGCGACGTGGAACACAAAACTGATGCCAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAAGCTTGGGAGGATCCTATCCTTGCGGAGTGGCCAGAAGgtattatgatgtagtcattcctatttagtatttactgattcgttaatttaattttatgt--atattgaaagtttgcttgtg--ttgtgaaagaccatctattat
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AGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAAAGCAATTCCCCGTAAAGCTGCTGGTCAAACTTGGGAGGATCCAACGCTTGCAGAGTGGCCAGAAAgtatgatt-cgttttccctctatctttgccttttcttttcttttcttttgcattactgatgaagatgacaatctttttgtaaattgtgtaatttgagttaa---
upper sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0018g01710.t01 (Vitis vinifera), 5'ss of exon 2
AGCGACGTGGAACACAAAACTGATGCCAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAAGCTTGGGAGGATCCTATCCTTGCGGAGTGGCCAGAAGgtattatgatgtagtcattcctatttagtatttactgattcgttaatttaattttatgtatattgaaagtt-tgcttgtgttgtgaaagaccatctatt-at--
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AGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAGAGCAATTCCTCGTAAAGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgatt-cattttccctcttatcttgccctttctttttgcatgattgcac---atatttggtgaaaattactcctaacttctagaaattgatatctttatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18040243|gb|BM308537.1|BM308537EST: GCTGCTGGCCAAGCTTGGGAAGGATC-TATCCCTGCGGAGTGGCCAGAAG ATGATTATCGGCTCTTCTGTGGGGATCTTGGT
genomic: GCTGCTGGCCAAGCTTGGGA-GGATCCTATCCTTGCGGAGTGGCCAGAAGgtattatgat ... ggattattagATGATTATCGGCTCTTCTGTGGGGATCTTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCGACGTGGAACACAAAACTGATGCCAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAAGCTTGGGAGGATCCTATCCTTGCGGAGTGGCCAGAAGgtattatgatgtagtcattcctatttagtatttactgattcgttaatttaattttatgtatattgaaagtttgcttgtgttgtgaaagaccatctattat
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT