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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGGgtaccataccaattactaaacttttgtttttaactattcgttcctagttatacacattatccttcgcttaagcccgttttttttattccttag

Basic information

species Glycine max
transcript GLYMA20G36490.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058789|gb|CA801703.1|CA801703
EST:     GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGG                         GTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCCCCAG
genomic: GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGGgtaccatacc ... tattccttagGTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCCACAG
EST: gi|26058846|gb|CA801760.1|CA801760
EST:     GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGG                         GTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCCCCAG
genomic: GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGGgtaccatacc ... tattccttagGTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCCACAG
EST: gi|298163414|gb|HO012147.1|HO012147
EST:     GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGG                         GTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCCCCAG
genomic: GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGGgtaccatacc ... tattccttagGTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCCACAG
EST: gi|13788034|gb|BG650626.1|BG650626
EST:     GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGG                         GTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCC
genomic: GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGGgtaccatacc ... tattccttagGTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCC
EST: gi|298193002|gb|HO033447.1|HO033447
EST:     GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGG                         GTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCCCCAG
genomic: GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGGgtaccatacc ... tattccttagGTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCCACAG
EST: gi|24136047|gb|BU926557.1|BU926557
EST:     GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGG                         GTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCCCCAG
genomic: GCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGGgtaccatacc ... tattccttagGTGAGGTTGGAAGCACAAACTGATTATTGCTGGCTGTGCGAATGGCCACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGGAGATGGTTCCTGAAGGGgtaccataccaattactaaacttttgtttttaactattcgttcctagttatacacattatccttcgcttaagcccgttttttttattccttag

- - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG