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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCGGAATCCATGTTTAACCATGCACCAGCCTTGGGCTTCTCTCCTCGTTTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAGgtttctctttttccttttcttttctttttgtgtttaatgttattttatgaaacaaacaaacacattattgacctgcatgtctcctatgttttgattttgtttgttaag

Basic information

species Glycine max
transcript GLYMA20G36490.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36490.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g64250.3 (Oryza sativa), 5'ss of exon 1
TATCGGAATCCATGTTTAACCATGCACCAGCCTTGGGCTTCTCTCCTCGTTTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAGgtttctctttttccttttcttttctttttgtgtttaatgttattttatgaaacaaacaaacacattattgacctgcatgtctcctatgttttgattttgtttgttaag
   ||||| || ||  | || ||||||||||| ||||| || || |||||  |||| |||||||||||||||||| | ||||||||  | ||  |||| |||  || | | ||| ||||||| |||  |   |       |     || ||  | |  || |  ||  |||  || ||       |                      
CTCCGGAACCCTTGCCTGACGATGCACCAGCCGTGGGCGTCGCTGCTCGTCCACGGAATCAAGCGCGTCGAGGGCCGCTCATGGCCATCGCCCCTCACCGgtagctatctatccctttctttccttccttcctcctccaatccaagattaataagattaaga--ttgatgaattgaattgaaagcag---------------------

upper sequence: GLYMA20G36490.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0081g00760.t01 (Vitis vinifera), 5'ss of exon 1
TATCGGAATCCATGTTTAACCATGCACCAGCCTTGGGCTTCTCTCCTCGTTTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAGgt--ttctctttttccttttcttttctttttgtgtttaatgttattttatgaaacaaacaaacacattattgacctgcatgtctcctatgttttgattttg---tttgttaag-
||| | || |||||||| ||||||||||| || |||||||| || || ||||| || ||||||||  | ||||| ||||| ||||| ||||| || | ||||  |  | ||   || |    |||||||  ||              ||| || |  | || ||  || ||  |||   ||      ||  |  ||   |    |  || ||  
TATAGAAACCCATGTTTGACCATGCACCAACCCTGGGCTTCACTGCTTGTTTATGGTATCAAGCGAATTGAGGGAAGGTCTTGGCCTGCTCCTATTAGAGgtaatcatattaaaccctacactttctttcagt--------------tataaaccctaaaaccatttttttttcctttttgcggagaatagtaggaaaataaaataagtaaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058789|gb|CA801703.1|CA801703
EST:     TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAG                         GTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA
genomic: TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAGgtttctcttt ... gtttgttaagGTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA
EST: gi|26058846|gb|CA801760.1|CA801760
EST:     TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAG                         GTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA
genomic: TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAGgtttctcttt ... gtttgttaagGTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA
EST: gi|298163414|gb|HO012147.1|HO012147
EST:     TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAG                         GTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAATCTACAATCA
genomic: TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAGgtttctcttt ... gtttgttaagGTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA
EST: gi|13788034|gb|BG650626.1|BG650626
EST:     TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAG                         GTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA
genomic: TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAGgtttctcttt ... gtttgttaagGTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA
EST: gi|298193002|gb|HO033447.1|HO033447
EST:     TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAG                         GTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA
genomic: TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAGgtttctcttt ... gtttgttaagGTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA
EST: gi|24136047|gb|BU926557.1|BU926557
EST:     TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAG                         GTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA
genomic: TTACGGGATCAAGCGCGTCGAGGGCAGGTCATGGCCCGCTCCAATCACAGgtttctcttt ... gtttgttaagGTCGTCTTTGGATTCATTCTGCCAGTAAAGTCCCGGAGGAGTCTACAATCA