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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttgctgtgcctattcctgatcttctcactttccttatctatgtatttattttggccggtttatagatctggcttgccattgggcctttctgttgcagCTGGCACTTCATCTTCTGTTCCAACGTTTCGTGGTACAAAT

Basic information

species Glycine max
transcript GLYMA20G36090.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36090.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0220g00160.t01 (Vitis vinifera), 3'ss of exon 5
gtactttgctgtgcctattcctgatcttctcactttccttatctatgtatttattttggccggtttatagatctggcttgccattgggcctttctgttgcagCTGGCACTTCATCTTCTGTTCCAACGTTTCGTGGTACAAAT
|||   || ||||||| ||| ||   | ||| ||| | |  |  |||| ||||| |||||   ||||||| ||| |||||||||||  ||||||||||||||||||   ||||||| |||| | || | | ||  || |||| 
gtatgatgttgtgcctgttcttgtcttgctcgcttgcttgcttaatgtgtttatattggcttctttatagttctagcttgccattgctcctttctgttgcagCTGGTGTTTCATCTGCTGTACAAATGCTGCGAAGTGCAAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692411|gb|AW760518.1|AW760518
EST:     CCGAACAATGTCCTTCAGTCGGCCAACAAACCTCTTAAATACTACAGCTG                         CTGGCACTTCATCTTCTGTTCCAACGTTTCGTGGTACAAAT
genomic: CCGAACAATGTCCTTCAGTCGGCCAACAAACCTCTTAAATACTACAGCTGgtactttgct ... tctgttgcagCTGGCACTTCATCTTCTGTTCCAACGTTTCGTGGTACAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttattttggccggtttatagatctggcttgccattgggcctttctgttgcagCTGGCACTTCATCTTCTGTTCCAACGTTTCGTGGTACAAAT
                                         cctttctgtt  CT-rich tract
                tttatagat  TA-rich tract