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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGTGGTGGCTGGATATGATAGACAAAACATTAGATGAAGGTTCAACATTTGAACGTATTGGATCCAGGCAACTTGCTGGCTTGGTCATTGCTGTGTGgtgagtatctatgagtaggagtagatgtgagctggtgaagctttattatgtcagaaataatgcctgttgtttgttaaggcaatatgacatgtgttaaatt...

Basic information

species Glycine max
transcript GLYMA20G36090.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36090.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0220g00160.t01 (Vitis vinifera), 5'ss of exon 3
GGCAGTGGTGGCTGGATATGATAGACAAAACATTAGATGAAGGTTCAACATTTGAACGTATTGGATCCAGGCAACTTGCTGGCTTGGTCATTGCTGTGTGgtgagtatctatgagtaggagtagatgtgagctggtgaagctttattatgtcagaaataatgcctgttgtttgttaaggcaatatgacatgtgttaaatt----------
||||||||||||||||||||||||  | ||| || |||||||| |||| |||||||||| ||||||| |||||  | || || ||  |||||||||| ||||||||||   ||   | | |   | |   ||| || | | ||   |   ||     |      | ||| | | |||    | | || |  |  |||||           
GGCAGTGGTGGCTGGATATGATAGGGAGAACTTTGGATGAAGGGTCAATATTTGAACGTGTTGGATCTAGGCAGTTGGCAGGATTACTCATTGCTGTATGgtgagtat---tggtcaaggg---acgctcgctagtaaggtttagattcttc----ttttctttttttgataggtaaaagcagaagataatttataaatgaggaaaaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692411|gb|AW760518.1|AW760518
EST:     TTTGAACGTATTGGATCCAGGCAACTTGCTGGCTTGGTCATTGCTGTGTG                         GGTTAAAACCAACATTAGATTTCATGTTGGGGATGTCGAAGTGGCAGCAGT
genomic: TTTGAACGTATTGGATCCAGGCAACTTGCTGGCTTGGTCATTGCTGTGTGgtgagtatct ... tctttttcagGGTTAAAACCAACATTAGATTTCATGTTGGGGATGTCGAAGTGGCAGCAGT