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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGAGTAGTGCTTTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATATTTCCAAAGGgtatgtatacttggtccataatgaattacagcttttatgacagcgtttaattgagtttgtaagctgtgtatttatgaaaattaaattaattgatgcag

Basic information

species Glycine max
transcript GLYMA20G36070.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36070.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0036g00570.t01 (Vitis vinifera), 5'ss of exon 11
AAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGAGTAGTGCTTTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATATTTCCAAAGGgtatgt-----atacttggtccataatgaattacagcttttatgacagcg--tttaattgagtttgtaagc-tgtgtatttatgaa---aattaaattaattgatgcag
|||||||| ||  | ||||||||||  ||||| ||  | ||||||||||| ||| ||||||||||||  |||||||  || ||||| || ||||| ||||||||||      |   |  |||| || || | | || |||     ||  |  |||     |   || |||  ||  |     || |   | |||  ||  |||||||||
AAGGTTGTGCGAAGGATCAACTGCATAGTTGAGCCTCTGGAATTTGGAGTTGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGgtatgttgcatgtgaattatccacaaaga-taatagttttggaagcatagattttgtcccaaaatgaaagaatggatgcacgtgtacttatttattttgtttgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298172412|gb|HO019452.1|HO019452
EST:     AGTGCTTTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATATTTCCAAAGG                         GATTTAGAAGCCGTGTTAGATACATAAATGTCTTATATCCATCCAGTATGT
genomic: AGTGCTTTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATATTTCCAAAGGgtatgtatac ... attgatgcagGATTTAGAAGCCGTGTTAGATACATAAATGTCTTAGATCCATCCAGTATGT