1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acatttgaattcacttctgtccatgtcactgttctgtttagttctgtcaattagctttatcagaaaatcatatctcttgacttgtcattttttttcccagGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAAGGCTGAGCCATATGGAATTTGTCGCATTGTTCCGCCATCTTCTTGGAAACCCCCTT
species | Glycine max |
transcript | GLYMA20G36070.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gtcaattagctttatcagaaaatcatatctcttgacttgtcattttttttcccagGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAAGGCTGAGCCATATGGAATTTGTCGCATTGTTCCGCCATCTTCTTGGAAACCCCCTT
tcttgac putative branch site (score: 3)
cttgtcattttttttc CT-rich tract
ttgtcatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatttgaattcacttctgtccatgtcactgttctgtttagttctgtcaattagctttatcagaaaatcatatctcttgacttgtcattttttttcccagGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAAGGCTGAGCCATATGGAATTTGTCGCATTGTTCCGCCATCTTCTTGGAAACCCCCTT
- - -tgaattc
- - - - - - - ttctgtc
- - - - - - - - - - -catgtca
- - - - - - - - - - - - - - - -ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtca