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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcactttccatagaatctcaatagtttgctgcttcatgaaattattgcctatttgttgcccttagtatatgctgctctctttacatttcattttctatactcttccagGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTCCCTAGCAAATCTAGTCAAGTAGGTTCTGCTTCACATGAACAGTACATAAAAT

Basic information

species Glycine max
transcript GLYMA20G36070.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36070.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0036g00570.t01 (Vitis vinifera), 3'ss of exon 7
gtcactttccatagaatctcaatagtttgctgcttcatgaaattattgcct-atttgttgcccttagtatatgctgctctctttacatttcattttc--tatactcttccagGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTCCCTAGCAAATCTAGTCAAGTAGGTTCTGCTTCACATGAACAGTACATAAAAT
                     ||  |   |   |  |     || ||   | || |||   |   |||          | |  ||    | ||| |   | ||||||   ||||||||||||| ||||| ||||||||||||  |||||| ||||| || || |     |||| ||  || |||||| | ||| ||||||  || | ||| |
-------------------gtatgataaacctatcaagagtttttttatttgatgtgtccgcaccagtgccaaacatccaccctaatgcttattgttgttctactctat-agGTGCTTTATGGGGCTGACCTGGAAACTGGGGATTTTGGCAGTGGGTTTCCCAAAGTTTCTAATCCTGTTGGTTCTACCTCAGATGAACGATATACAAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcccttagtatatgctgctctctttacatttcattttctatactcttccagGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTCCCTAGCAAATCTAGTCAAGTAGGTTCTGCTTCACATGAACAGTACATAAAAT
                                tttcattttctatact  CT-rich tract
                          tttacatttcatttt  TA-rich tract