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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtacatttgtcatttgctctatacccaactttgtttaaaatcaattatgtgaatattcggattctgtggttggttacagagtatctaggatgtttcatttattattgtatttgatatataatgcttgtctgtcttgcattgcttgtatttctcttcagCCAATTGGTCAGTCCTCCAATGATTCTGCCAATATCAATATTCCTGCATCACTTTTAGTGCCTCATCTTCACAATCTTTTTCAGCAGACATCTATTCAAC

Basic information

species Glycine max
transcript GLYMA20G35970.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208072541|gb|GD869815.1|GD869815
EST:     TGAGGAAATCTGCGAGTGTTGGTGATTGGATGGTGGATTACAAACAAATG                         CCAATTGGTCAGTCCTCCAATGATTCTGCCAATATCAATATTCCTGCA
genomic: TGAGGAAATCTGCGAGTGTTGGTGATTGGATGGTGGATTACAAACAAATGgtttgtacat ... ttctcttcagCCAATTGGTCAGTCCTCCAATGATTCTGCCAATATCAATATTCCTGCA
EST: gi|7926554|gb|AW832580.1|AW832580
EST:     TGAGGAAATCTGCGAGTGTTGGTGATTGGATGGTGGATTACAAACAAATG                         CCAATTGGTCAGTCCTCCAATGATTCTGCCAATATCAATATTCCTGCATCA
genomic: TGAGGAAATCTGCGAGTGTTGGTGATTGGATGGTGGATTACAAACAAATGgtttgtacat ... ttctcttcagCCAATTGGTCAGTCCTCCAATGATTCTGCCAATATCAATATTCCTGCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtatttgatatataatgcttgtctgtcttgcattgcttgtatttctcttcagCCAATTGGTCAGTCCTCCAATGATTCTGCCAATATCAATATTCCTGCATCACTTTTAGTGCCTCATCTTCACAATCTTTTTCAGCAGACATCTATTCAAC
     atttgat  putative branch site (score: 5)
 cttgtatttctcttc  putative PPT
 atttgatatataat  TA-rich tract