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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttttagttttttttcttattaatcaaattgtccctatcgacaattttaactgacttcatattgaatag

Basic information

species Glycine max
transcript GLYMA20G35970.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35970.2 (Glycine max), 5'ss of exon 11
lower sequence: AT4G10730.1 (Arabidopsis thaliana), 5'ss of exon 14
GATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgc---tttttagttttttttcttattaatcaaattgtccctatcgacaattttaactgacttcatattgaatag-------------------------------------------------------------------------------------------------------------------
||||  | |||||  | ||||| ||||| ||||||||| | || ||||| |||||| |||||||||| ||||||||||| || ||||| |  | ||||||    | |||   |  | |||  |||  ||    | |     |  | || |   ||  || | |  | | |||                                                                                                                    
GATTTCGTGATTCTATAGATGACAAGTCGAAGGCTAATGTGGTTCAAATCAAAGGAAGATTTTCAGTAACATCAGAAAACTTGGATCTTGCAAGGgtatgtatatctttttctgctattcacattcgtctttatatggaagttaataacta-gaccaacctaacctaggatattctacttagtcctttgtcgatcttcgcgagtttgttttagtctttctgttctagtgtagtgatgatttttgtctcctgggttttacctgattaattcatactctttaaactacag

upper sequence: GLYMA20G35970.2 (Glycine max), 5'ss of exon 11
lower sequence: AT4G24100.1 (Arabidopsis thaliana), 5'ss of exon 13
GATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttttagttttttttcttattaatcaaattgtccctatcgacaattttaactgacttcatattgaatag
||||| | |||||  ||||||||||||| ||||||||||| || || |   |||||||||||||||| ||||||| |||| ||||||| | |||||| || | |||| |||  |    |||||||     | |  || | |||  |    |   |    || |    |||
GATTCCGTGATTCTCTGGATGATAAGTCAAAGGCTAATCTGGTTCAGA---AAGGACGATTTTCAGTAACATCAGGAAATGTAGATCTTGCGAAGgt-tggtatttaatttactgc--tattaattttcctatttct-ttgacggtaactaacaatacaatctactctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207737653|gb|GD714171.1|GD714171
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAGG                         GATATTCCTGTAAGTTCAGTTTCACGCCGATCTTCACAG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
EST: gi|208109628|gb|GD905302.1|GD905302
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAGG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAGG
EST: gi|208072541|gb|GD869815.1|GD869815
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
EST: gi|7926554|gb|AW832580.1|AW832580
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
EST: gi|193515754|gb|FK473344.1|FK473344
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
EST: gi|193412366|gb|FK381293.1|FK381293
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCACGCCGATCTTCACAGGGAT
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAGGGAT
EST: gi|193621788|gb|FK568590.1|FK568590
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCACGCCGATCTTCACAG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG