Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAGGAAGTGATTGGACCCAGATTGTACTGTTGCTCTAATTGTAGAAACCATGTTGCCCTTCATGACGATGTGATTTCAAAGGCCTTTCAGgttaacactattctcagccttaacttctaaattctgttctgaattcatttgatctgtttactacctttctaccatgatcaaacaagataaccaatctgct...

Basic information

species Glycine max
transcript GLYMA20G35950.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35950.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g02370.t01 (Vitis vinifera), 5'ss of exon 1
-------ATGGAGGAAGTGATTGGACCCAGATTGTACTGTTGCTCTAATTGTAGAAACCATGTTGCCCTTCATGACGATGTGATTTCAAAGGCCTTTCAGgttaacactattctcagccttaactt---ctaaattctgttctgaattcatttgatctgtttactacctttctaccatgatcaa-acaagataaccaatctgct
       |||| ||| ||  |||| || ||||||||  |||||| ||||||  ||||||||||||| |||||||| ||||| ||||| || || |||||||| || |   |  | |   ||   |    |||   |||||| ||   ||||||| ||| | |  || ||   ||      | || |  | |||| |||      
ATCATCAATGGGGGAGGTTGTTGGGCCAAGATTGTATAGTTGCTGTAATTGCCGAAACCATGTTGCTCTTCATGATGATGTTATTTCTAAAGCATTTCAGgtgaagaacttcatgaaattttcttgtagctatgctctgttgtgtggtcatttgttctctctgatagctggttagaggcctaaagattaaataatcaaag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984904|gb|BE659012.1|BE659012
EST:     GTAGAAACCATGTTGCCCTTCATGACGATGTGATTTCAAAGGCCTTTCAG                         GGGAAAAGTGGACGGGCTTTTCTGTTTACTCGTGCAATGAACGTTACAATA
genomic: GTAGAAACCATGTTGCCCTTCATGACGATGTGATTTCAAAGGCCTTTCAGgttaacacta ... ttgatttcagGGGAAAAGTGGACGGGCTTTTCTGTTTACTCGTGCAATGAACGTTACAATA
EST: gi|6964532|gb|AW433225.1|AW433225
EST:     GTAGAAACCATGTTGCCCTTCATGACGATGTGATTTCAAAGGCCTTTCAG                         GGGAAAAGTGGACGGGCTTTTCTGTTTACTCGTGCAATGAACGTTACAATA
genomic: GTAGAAACCATGTTGCCCTTCATGACGATGTGATTTCAAAGGCCTTTCAGgttaacacta ... ttgatttcagGGGAAAAGTGGACGGGCTTTTCTGTTTACTCGTGCAATGAACGTTACAATA