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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctacaaattcagtttcaatttgtaattgaaaatcataattgattgaacactgaaaatgctatgttcatgctcatggtaaagtctttttcgttggaaaggattgatttgagataatattttatatctcagATGGAGGAAGTGATTGGACCCAGATTGTACTGTTGCTCTAATTGTAGAAACCATGTTGCCCTTCATGACGATGTGATTTCAAAGGCCTTTCAG

Basic information

species Glycine max
transcript GLYMA20G35950.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984904|gb|BE659012.1|BE659012
EST:     GAGAACTTGAAGGCAAAGCAGACTCAATCAGCTACTGTTAAGAGGAGCAG                         ATGGAGGAAGTGATTGGACCCAGATTGTACTGTTGCTCTAATTGTAGAAAC
genomic: GAGAACTTGAAGGCAAAGCAGACTCAATCAGCTACTGTTAAGAGGAGCAGgtagctacaa ... tatatctcagATGGAGGAAGTGATTGGACCCAGATTGTACTGTTGCTCTAATTGTAGAAAC
EST: gi|6964532|gb|AW433225.1|AW433225
EST:     GAGAACTTGAAGGCAAAGCAGACTCAATCAGCTACTGTTAAGAGGAGCAG                         ATGGAGGAAGTGATTGGACCCAGATTGTACTGTTGCTCTAATTGTAGAAAC
genomic: GAGAACTTGAAGGCAAAGCAGACTCAATCAGCTACTGTTAAGAGGAGCAGgtagctacaa ... tatatctcagATGGAGGAAGTGATTGGACCCAGATTGTACTGTTGCTCTAATTGTAGAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtaaagtctttttcgttggaaaggattgatttgagataatattttatatctcagATGGAGGAAGTGATTGGACCCAGATTGTACTGTTGCTCTAATTGTAGAAACCATGTTGCCCTTCATGACGATGTGATTTCAAAGGCCTTTCAG
                        gattgat  putative branch site (score: 4)
                         attgatttgagataat  TA-rich tract