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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGTTGTTGTTCAGCGTATAGAAGAAAGATTATCCGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGgtattgtcttgttataaattatagccttttctttcacatgctaatctctttatactaatttaggattgaaatttgatatggagacaattatgtttgcatg...

Basic information

species Glycine max
transcript GLYMA20G35750.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35750.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g44620.1 (Oryza sativa), 5'ss of exon 6
TCAAGTTGTTGTTCAGCGTATAGAAGAAAGATTATCCGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGgta---ttgtcttgttataaat-tatagccttttctttcacatgctaatctctttatactaatttaggattgaaatttgatatggagacaattatgtttgcatg
|||||| |||||||||||||| || |||||  |||| || || || |||||| |||| || ||||||||||| || || |||||| |||| || |||||||||    | ||||  ||||  | | |||   | | | |      || |   ||||   ||| | |     |  || |  |||||    |   |   ||  |  |
TCAAGTGGTTGTTCAGCGTATTGATGAAAGGCTATCTGCGCTTGGCAATTGTGTAGCTTGCAATGACCATGTCGCGCTTACACACCCTGACCTCGACAAGgtaagcctatcttcgtatatctctctagtgatgtttcttg---acttaatgcttttccctattgt----ctcgaactaaatatgcctgctgctcaattctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183684|gb|HO028897.1|HO028897
EST:     GTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAG                         GAAACTGAGGAGATGATTGCAGATGTTCTGGGAGTAGA
genomic: GTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGgtattgtctt ... ttttgttcagGAAACTGAGGAGATGATTGCAGATGTTCTGGGAGTAGA
EST: gi|298165809|gb|HO008780.1|HO008780
EST:     GTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAG                         GAAACTGAGGAGATGATTGCAGATGTTCTGGGA
genomic: GTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGgtattgtctt ... ttttgttcagGAAACTGAGGAGATGATTGCAGATGTTCTGGGA
EST: gi|298184021|gb|HO029234.1|HO029234
EST:     GTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAG                         GAAACTGAGGAGATGATTGCAGAT
genomic: GTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGgtattgtctt ... ttttgttcagGAAACTGAGGAGATGATTGCAGAT