1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccaccatagttacacttacatcaatatattttatttattgatttatcatttattagatttagacctatcacaattagcttccctatttattggtttgcagGAAACAAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAG
species | Glycine max |
transcript | GLYMA20G35750.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTG GAAACAAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAGEST: gi|298165809|gb|HO008780.1|HO008780
genomic: GGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTGgtaaagtttt ... tggtttgcagGAAACAAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAG
EST: GGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTTGTCTTTGTGTTG GAAACGAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAGEST: gi|298186716|gb|HO037349.1|HO037349
genomic: GGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTGgtaaagtttt ... tggtttgcagGAAACAAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAG
EST: GGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTG GAGACAAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAGEST: gi|298184021|gb|HO029234.1|HO029234
genomic: GGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTGgtaaagtttt ... tggtttgcagGAAACAAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAG
EST: GGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTG GAAACAAGAACCGGCTTCTCTTGCCCCATACCATCACAGACCAAG
genomic: GGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTGgtaaagtttt ... tggtttgcagGAAACAAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAG
tcatttattagatttagacctatcacaattagcttccctatttattggtttgcagGAAACAAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAG
cttccctatttatt CT-rich tract
tattagattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaccatagttacacttacatcaatatattttatttattgatttatcatttattagatttagacctatcacaattagcttccctatttattggtttgcagGAAACAAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC