1 5' 3' | 2 5' 3' |
...ttgttgttttctgacccgctagaattaaacaatgggaacgcgaatctcgcgcaattatttcattaatataataattaaccattttgatccttattttcagGTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATAAAAAATGTTTGGCACACCAATTTGAAGAAGAGGCTGCTGAAATCAGACCAG
species | Glycine max |
transcript | GLYMA20G35180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGTTGGGAAACAG GTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATAAAEST: gi|151408831|gb|EV278639.1|EV278639
genomic: ATTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGTTGGGAAACAGgtatattcac ... ttattttcagGTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATAAA
EST: TTTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGTTGGGAAACAG GTGGTCAGCAATTTGCAGCCAAATTTGCCAGGAAGAACTGACAATGAGATAEST: gi|151412894|gb|EV282706.1|EV282706
genomic: -TTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGTTGGGAAACAGgtatattcac ... ttattttcagGTGGTCAGCAA-TTGCAGCCAAA-TTGCCAGGAAGAACTGACAATGAGATA
EST: ATTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGTTGGGAAACAG GTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATAAAEST: gi|7925431|gb|AW831457.1|AW831457
genomic: ATTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGTTGGGAAACAGgtatattcac ... ttattttcagGTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATAAA
EST: ATTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGTTGGGGAACAG GTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATAAA
genomic: ATTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGTTGGGAAACAGgtatattcac ... ttattttcagGTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATAAA
ctcgcgcaattatttcattaatataataattaaccattttgatccttattttcagGTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATAAAAAATGTTTGGCACACCAATTTGAAGAAGAGGCTGCTGAAATCAGACCAG
tccttattttc CT-rich tract
aattatttcattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgttttctgacccgctagaattaaacaatgggaacgcgaatctcgcgcaattatttcattaatataataattaaccattttgatccttattttcagGTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATAAAAAATGTTTGGCACACCAATTTGAAGAAGAGGCTGCTGAAATCAGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
-tgttgtt
- - - - - ctgaccc
- - - - - - - - - - - - - - - - - - - - - - -ctcgcgc