Sequence
atgc intronic sequence ATGC exonic sequenceAGAAGAAGTTAAAATTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGATCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtggtgtgttcttttctgaattctataatttactttgggttacagttgcatattaactgcataactggccggtctattatttccag
Basic information
species | Glycine max |
transcript | GLYMA20G35110.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 5'ss of exon 9
AGAAGAAGTTAAAATTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGATCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtg-gtgt-gttcttttctgaattctataatttactt-tgggttacagttgcatattaactgcataactggccggtcta-ttatttccag
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AGATGAGGTTAGACTATCACCAGAAGCCAAGGATCTTATTTGTAGGCTTTTATGCAATGTTGAACAAAGGCTTGGAACAAAAGGAGCAGATGAAATTAAGgtgttgtatgcgttgttcaactttgagattcaaagttcccttatgtaagatcattgtgtgcaattcttaaaaacgatttgactggtttctttcag
upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 8
AGAAGAAGTTAAAATTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGATCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtg--gtgtgttcttttctgaattctataatttactttgggttacagttgcatattaactgcataac-tggccggtctattatttccag
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AGAAGAAGCAAAGTTATCTCCAGAAGCAAAGGACCTTATTAGTAAGCTCTTATGTAATGTTGACCAGAGGCTTGGAACTAAAGGGGCAGATGAAATAAAGgtgttgtgtggtgtgttcaattctgaattactggatttggttcacaatggaattacaaagtgag-gaataatgtggttggctctgtaaattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20814304|gb|BQ298782.1|BQ298782EST: TATGTAATGTGGATCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAG GCGCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTTCCAAATTAAA
genomic: TATGTAATGTGGATCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtggt ... ttatttccagGCGCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATTAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAGAAGTTAAAATTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGATCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtggtgtgttcttttctgaattctataatttactttgggttacagttgcatattaactgcataactggccggtctattatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT