Sequence
atgc intronic sequence ATGC exonic sequenceTAAAGGTATTGAATGGGACAAATTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattatatatttttattttcatggatatagatgtggtttttgtctgctgttactaaccagtatcatgctgcttaatttactaatgatgtgtag
Basic information
species | Glycine max |
transcript | GLYMA20G35110.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35110.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 9
TAAAGGTATTGAATGGGACAAATTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattatatatttttattttcatggatatagatgtggtttttgtctgctgttactaaccagtatcatgctgcttaatttactaatgatgtgtag
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TAGTGGAGTAGAATGGGACAAATTATATGAAATAGAAGCAGCATATCAACCTCAAGTCACTGATGAGTTAGATACTCAGAATTTTGAGAAGTTTGAAGAGgttaggggt---cgtttcttttggcctaaaggaattcagtttcaataagttggtataaatgttattcctatggtgtgttttgcag-----------
upper sequence: GLYMA20G35110.2 (Glycine max), 5'ss of exon 10
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 5'ss of exon 10
TAAAGGTATTGAATGGGACAAATTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattat--atatttttattt--tcatggatatagatgtggtttttgtctgctgttactaaccagtatcatgctgcttaatttac-taatgatgtgtag------------------------------------------------------------------------
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TAGAGGCACAGAATGGGGAAAATTGTATCAAATGAAAGCTGCCTTTATTCCCCAAGTTAATGATGAGTTGGACACCCAAAATTTTGAGAAATTTGAAGAGgtaacacactgatactatcagctaatgatgtctatag-tgaaatattggtgcaatatatgccaccaa-atgatgtggcatgatgtatatactgaaatattggtatcacagatgatttttatgctcctgataaggaaaataatgtatactcttctttgattccttctggaacag
upper sequence: GLYMA20G35110.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 9
TAAAGGTATTGAATGGGACAAATTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattatatatttttattttcatggatatagatgtggtttttgtctgctgttactaaccagtatcatgctgcttaatttactaatgat-gtgtag---
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TGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTGAGAAGTTTGAAGAGgtgag--gagtgcttctacttgtatgagtgttgtggatactcctgcttggagatgtt------tttgttgctgatttaccccctattgattatgaggcag
upper sequence: GLYMA20G35110.2 (Glycine max), 5'ss of exon 10
lower sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 9
TAAAGGTATTGAATGGGACAAATTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattatatatttttattttcatggatatagatgtggtttttgtctgctgttactaaccagtatcatgctgcttaa--tttactaatgatgtgtag------
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CAAAGGATTGCCATGGGAAAGGTTATATGAAATGGAGGCCGCTTTTAAACCGGAAGTGAAAGATGAGTTGGATACTCAGAATTTTGAGAAATTTGAAGAGgt----taacagtccttcctatctagaacattcgtttacctttcaaatcagaatctttggcactcttagagttgttaaactctgatgataattttcaaatagttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20814304|gb|BQ298782.1|BQ298782EST: CTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAG GCTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAG
genomic: CTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattata ... tgatgtgtagGCTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAAGGTATTGAATGGGACAAATTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattatatatttttattttcatggatatagatgtggtttttgtctgctgttactaaccagtatcatgctgcttaatttactaatgatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA