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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCGGAAGGATATACTGACAGAAAATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaagctgcaaatagtcatgttacaccatgaaaatcttatattaatcttatggtggtcttgttttcttgcacataaaaaaaaaaagatataatattctaattttgatatgcattccag

Basic information

species Glycine max
transcript GLYMA20G35110.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 5
TCATGCGGAAGGATATACTGACAGAAAATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaagctgcaaatagtcatgttacaccatgaaaatcttatattaatcttatggtggtcttgttttcttgcacataaaaaaaaaaagatataatattctaattttgatatgcattccag
| ||| |||| || | ||| || ||| ||||||| || || ||||||||||| |||||| ||||||| ||||| |||||||| || |||||||| || ||||    | ||||    ||   ||    || |     |   | | || ||  | || ||||| |||     ||      |       ||   | || |                           
TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagtgaagcaatcaactatctgagtaaatttgtagcgtatcatttttcttttttggtgttctgaccatcc-atttacttctccaatttgttacag--------------------------

upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 5'ss of exon 5
TCATGCGGAAGGATATACTGACAGAAAATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaagctgcaaatagtcatgttacaccatgaaaatcttatattaatcttatggtggtcttgttttcttgcacataaaaaaaaaaagatataatattctaattttgatatgcattccag
| ||| |||| || |  || || ||| | ||||||||||| ||| ||||||| |||||||| ||||| ||||| |||||||| || || || ||||| |||| || | |||| | | ||| | || |||   |  |      || |  |  | || |    ||||| ||||||   |  | | | |                                      
TTATGAGGAAAGACACCCTCACTGAAGACGAGGCCAGGTTTTATATTGGGGAAACTGTCCTGGCTATTGAGTCCATTCATAAGCACAACTACATTCACAGgtcag-tgaagcagaatata-tgat-ttagttctagctcccattgttattttgttctaaacgtctttttttctccaatgtgatacag-------------------------------------

upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
TCATGCGGAAGGATATACTGACAGAAAATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaagctgcaaatagtcatgttacaccatgaaaatcttatattaatcttatggtggtcttgttttcttgcacataaaaaaaaaaagatataatattctaattttgatatgcattccag
| ||||| |||||||   |||| ||| |||||||||| || |||||||| || || ||||| ||||| ||||| || ||||| |||||||||||||||||||  |   ||| |     |  ||||| |      ||  || | |||       |     || || ||  ||               || |||  ||||   |||   | |  ||   ||| |||
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgtttgtgtaagatt----ttatcatgattgtatgtgggaaccatatgcatgcttc----tgatcatgactt---------------aagaagcaataaccctctccatatt-tacttattacag