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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttttattgtcttaactgattctttatttttttctctatactttttttttggttaaatgtacaaagaattaattccttgttttacagtattagctttacttttatgcttgcagTTCTACTTCAAAAATGGCCGTCCACCTCCAAGTGAAATGAAAGAGCATTTCATTTATCAAATTGATAGTAGATTTTATGGTCATTTGGATGGTCTACAAT

Basic information

species Glycine max
transcript GLYMA20G35090.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048229|gb|CA784770.1|CA784770
EST:     CACTAAAATTAGCCAGTGAACCTGTAAGGGAGAGGGAGGTCATTCCGCAG                         TTCTACTTCAAAAATGGCCGTCCACCTCCAAGTGAAATGAAAGAGCATTTC
genomic: CACTAAAATTAGCCAGTGAACCTGTAAGGGAGAGGGAGGTCATTCCGCAGgtattttttt ... atgcttgcagTTCTACTTCAAAAATGGCCGTCCACCTCCAAGTGAAATGAAAGAGCATTTC
EST: gi|17963079|gb|BM269832.1|BM269832
EST:     CACTAAAATTAGCCAGTGAACCTGTAAGGGAGAGGGAGGTCATTCCGCAG                         TTCTACTTCAAAAATGGCCGTCCACCCCCAAGTGAAATGAAAGAGCATTTC
genomic: CACTAAAATTAGCCAGTGAACCTGTAAGGGAGAGGGAGGTCATTCCGCAGgtattttttt ... atgcttgcagTTCTACTTCAAAAATGGCCGTCCACCTCCAAGTGAAATGAAAGAGCATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacaaagaattaattccttgttttacagtattagctttacttttatgcttgcagTTCTACTTCAAAAATGGCCGTCCACCTCCAAGTGAAATGAAAGAGCATTTCATTTATCAAATTGATAGTAGATTTTATGGTCATTTGGATGGTCTACAAT
        aattaat  putative branch site (score: 3)
                                        cttttat  putative PPT
     aagaattaatt  TA-rich tract