1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gcttgctttggattgtattataaattataaatcttaatttatataacatagcaaaacttggcatatcataacagtgggtatctcatgcatttggttttagGCCTAAATGGATATCATCATAACTGCAGATGAATAAAAGGCTATGGATTCCAGCCACTGAATATGCAAGCAGTATAATATTTGAAGAGGCTATGTTGCCG
species | Glycine max |
transcript | GLYMA20G35090.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAGTGGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAAG GCCTAAATGGATATCATCATAACTGCAGATGAATCAAAGGCTATGGAEST: gi|193694255|gb|FK630323.1|FK630323
genomic: CAGTGGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAAGgtaggttcag ... ttggttttagGCCTAAATGGATATCATCATAACTGCAGATGAATAAAAGGCTATGGA
EST: CAGTGGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAAG GCCTAAATGGATATCATCATAACTGCAGATGAATAAAAEST: gi|51335889|gb|CO979755.1|CO979755
genomic: CAGTGGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAAGgtaggttcag ... ttggttttagGCCTAAATGGATATCATCATAACTGCAGATGAATAAAA
EST: CAGTGGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAAG GCCTAAATGGATATCATCATAACTGCAGATGAATCAAAGGCTATGGATTCC
genomic: CAGTGGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAAGgtaggttcag ... ttggttttagGCCTAAATGGATATCATCATAACTGCAGATGAATAAAAGGCTATGGATTCC
acatagcaaaacttggcatatcataacagtgggtatctcatgcatttggttttagGCCTAAATGGATATCATCATAACTGCAGATGAATAAAAGGCTATGGATTCCAGCCACTGAATATGCAAGCAGTATAATATTTGAAGAGGCTATGTTGCCG
tcataac putative branch site (score: 2)
atatcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgctttggattgtattataaattataaatcttaatttatataacatagcaaaacttggcatatcataacagtgggtatctcatgcatttggttttagGCCTAAATGGATATCATCATAACTGCAGATGAATAAAAGGCTATGGATTCCAGCCACTGAATATGCAAGCAGTATAATATTTGAAGAGGCTATGTTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
gcttgct
- - - - - - - - - - - - - - - - - - - - - - - - - -caaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca