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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAAAGGCAGTAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAGgtaaaaataagattaagatcctatatcactaacaattaaggcttagtaatgttagtaaattctgattacaacaagggtattttgtttag

Basic information

species Glycine max
transcript GLYMA20G35090.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35090.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 11
TGTTAAAGGCAGTAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAGgtaaaaataaga-ttaagatcctata---tcactaacaatta--aggcttagtaatgttagtaaattctgattacaacaagggtattttgtttag
  | ||| |  ||||||| || |||||  | ||||||||||||||||||||||||||||| ||  | || || |||||||||||||| ||||| || ||||| |  ||||   |||| |  || ||   |  ||  ||| ||  | | | | |||| |   |||  | | |||  |                   
CTTAAAACGGTGTAAACTCTCAGGAAACATATTCAATATTCTTTTCAATCTCAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataatccttaataaactttagatttgctgccaagtattaagttaaataat-tggctaatgtttaattgtag------------------

upper sequence: GLYMA20G35090.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
TGTTAAAGGCAGTAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAGgta--aaaata---agattaagatcctatatcactaacaattaaggcttagtaatgttagta---aattc--tgattacaacaagggt----attttgtttag
  | ||  |  ||||| | ||||| ||| ||||||||||||| ||||| || ||||||||  |  | || ||||||||||| || |||||||| |||||||||  | | ||   | ||  | | |||  ||  | ||   |||     |  ||| |  |||    | |||  |  | ||||  | |      || || |||  
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgtattacattactcatatcgaaaacctggatttc-aattcttagttggtcataaagcgagtgtccagttcattattcacaattatgaactaaatcttattt--

upper sequence: GLYMA20G35090.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S147_62V6.2 (Physcomitrella patens), 5'ss of exon 11
TGTTAAAGGCAGTAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAGgta----aaaataagatt-aagatccta---tatcactaacaattaaggcttagtaatgt--tagtaaattctgattacaacaagggtattttgtttag-
| | ||  |  ||||| | ||||| ||  | |||||||| || ||||||||||| |||||  || |||| ||||||||||| || || ||||| |||||||||        |   ||| ||||||  |   ||||| | |   |  | ||||  || |||  ||  |||  | | |  |       || | |   ||   
TTTGAAGCGATGTAAATTGTCTGGGAACTTCTTCAATATACTCTTCAATCTCAATAAGTTCGTTGCTTTTGAGACTCGTGACCCCTTCCTCATCCGTCAGgtatttcgtcctcttattcaagatctcagcatatcagtcatcttctaagcttgatattgtagtacgaaaaacaggtccctttcgacgtttataaattgcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343535|gb|CO984268.1|CO984268
EST:     TCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAG                         GAACGTGAGGATCCAAATTTGACAGAGTGGGATCGTTTTGCACATAGAGAG
genomic: TCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAGgtaaaaataa ... ttttgtttagGAACGTGAGGATCCAAATTTGACAGAGTGGGATCGTTTTGCACATAGAGAG
EST: gi|193694255|gb|FK630323.1|FK630323
EST:     TCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAG                         GAACGTGAGGACCCAAATTTGACAGAGTGGGATCGTTTTGCACATAGAGAG
genomic: TCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAGgtaaaaataa ... ttttgtttagGAACGTGAGGATCCAAATTTGACAGAGTGGGATCGTTTTGCACATAGAGAG
EST: gi|51335889|gb|CO979755.1|CO979755
EST:     TCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAG                         GAACGTGAGGATCCAAATTTGACAGAGTGGGATCGTTTTGCACATAGAGAG
genomic: TCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAGgtaaaaataa ... ttttgtttagGAACGTGAGGATCCAAATTTGACAGAGTGGGATCGTTTTGCACATAGAGAG