1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcattcaattaataacacctagcagttccatgacaaagatattagtttattatagttttaaaatgttgtaggaccttaaaggcttactattttggcacagGCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATGATCAGAAGTCTCTTGATGAATGACTCTTGCATTCTTACTCTCATGTTGA
species | Glycine max |
transcript | GLYMA20G34980.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATGEST: gi|9898873|gb|BE607841.1|BE607841
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatgtc ... tttggcacagGCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATG
EST: AATTTTGTACTGACTNTTCTCCTATCTGTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGCTTGGATGATATGAAGGCGTCAEST: gi|58015415|gb|CX702157.1|CX702157
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatgtc ... tttggcacagGCTCGTTGTGGCTTGGATGATATGAAGGCGTCA
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATGEST: gi|6228232|gb|AW156831.1|AW156831
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatgtc ... tttggcacagGCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATGEST: gi|58015688|gb|CX702430.1|CX702430
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatgtc ... tttggcacagGCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATGEST: gi|9984695|gb|BE658803.1|BE658803
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatgtc ... tttggcacagGCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATGEST: gi|192304254|gb|FG993538.1|FG993538
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatgtc ... tttggcacagGCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatgtc ... tttggcacagGCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATG
tttattatagttttaaaatgttgtaggaccttaaaggcttactattttggcacagGCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATGATCAGAAGTCTCTTGATGAATGACTCTTGCATTCTTACTCTCATGTTGA
ggcttac putative branch site (score: 3)
ctatttt CT-rich tract
tatagttttaaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattcaattaataacacctagcagttccatgacaaagatattagtttattatagttttaaaatgttgtaggaccttaaaggcttactattttggcacagGCTCGTTGTGGCTTGGATGATATGAAGGCGTCATGAAGTCACGGGTTCATGATCAGAAGTCTCTTGATGAATGACTCTTGCATTCTTACTCTCATGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
gcattca
- - - - - - - - -cctagca
- - - - - - - - - - - - - - catgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgta