1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attttgtgaccagagacctcaagaaatggttagtagttgcatttaattctcgtattttaatttatgattcatttatttctctaacgtgcaaaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGATTGGTCAATGTCACAAGCCTGTACAGATTCCTATAACAAGACTCTAAAG
species | Glycine max |
transcript | GLYMA20G34980.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGAEST: gi|58015415|gb|CX702157.1|CX702157
genomic: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGAEST: gi|6228232|gb|AW156831.1|AW156831
genomic: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: CTTCTTTGGCTTACAAG AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGAEST: gi|151400774|gb|EV270588.1|EV270588
genomic: CTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGAEST: gi|21888981|gb|BQ742194.1|BQ742194
genomic: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGAEST: gi|58015688|gb|CX702430.1|CX702430
genomic: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGAEST: gi|9984695|gb|BE658803.1|BE658803
genomic: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: CTTCNTTGGCTTACAAG AGCAATGGATTTNTTAGTGNNATTATTCCAAAACTTAATTGAGCATGCAGAEST: gi|192304254|gb|FG993538.1|FG993538
genomic: CTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: TCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG AGCAATGGATTTCTTAGTGGCATTATTCCAAAACCTAATTGAGCATGCAGA
genomic: TCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
attctcgtattttaatttatgattcatttatttctctaacgtgcaaaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGATTGGTCAATGTCACAAGCCTGTACAGATTCCTATAACAAGACTCTAAAG
ctctaac putative branch site (score: 2)
ttttc putative PPT
tattttaatttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgtgaccagagacctcaagaaatggttagtagttgcatttaattctcgtattttaatttatgattcatttatttctctaacgtgcaaaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGATTGGTCAATGTCACAAGCCTGTACAGATTCCTATAACAAGACTCTAAAG
-ttttgtg
- - - - - - - -acctcaa
- - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacgtgc