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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACATGGCAGGATCAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaactttttgccaatttgatttcattttttaatcatgtagttctctgctgattagtatactatactgtcaatgaaattatag

Basic information

species Glycine max
transcript GLYMA20G34970.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34970.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g56540.1 (Oryza sativa), 5'ss of exon 3
TGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACATGGCAGGATCAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaact--ttttgccaat-ttgatttcattttttaatcatgtagttctctgctgattagtatactatactgtcaatgaaattatag----------------
 ||||||||| | ||||| ||  |||| |||||||| || ||||| || || || || || |||  ||| || |||||||||||||| ||||||||||||||   |  | |  | |||     | | ||||| || |  |  ||      | |  | |   |||        |||||||    ||                 
GGATGTTCCATCGGTGGGGGGAAGGCTCATGCTTGTGGATATGGCTGGTTCTGAGAACATAGAAGCAGCAGGCCAAACTGGATTTGAAGCCAAAATGCAGgtctgtgatgtcactaatgcctgtataattttgtact--ttcagcaggacgtttttaaagttaccccttcaacaatgaatacctaatacagaagaataatta

upper sequence: GLYMA20G34970.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G408308_T01 (Zea mays), 5'ss of exon 2
TGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACATGGCAGGATCAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaacttttt--gccaatttgatttcattttt--taatcatgt------agttctctgctgattagtatactatactgtcaatgaaattatag---------------------------------------------------------------------------------------------------------
 ||||| ||| ||||||||||  |  |||||||||| |||||||| ||||| ||||| || |||   || || ||||| |||||||| ||||||||||||||   || |    || |||    |   ||| |   |   ||||      |  |  |   ||     |  || || || | || ||| ||                                                                                                             
GGATGTCCCATCTGTGGGAGGAAGATTAATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCTGCAGGACAAACAGGATTTGAAGCCAAAATGCAGgtgtgttatgcaaccgattcatgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaattcttttaa-gaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgccacatgaatttgtaccactgtcaaaagccacatgtgcgatcaatagtgttgctacttttttcacag

upper sequence: GLYMA20G34970.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G150984_T02 (Zea mays), 5'ss of exon 3
TGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACATGGCAGGATCAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaactttttgccaatttgatttcattttttaatcatgtagttctctgctgattagtatactatactgtcaatgaaattatag--------------------------------------------------------------------------------------------------------------------
 ||||| ||| ||||||||||  |  |||||||||| |||||||| ||||| ||||| || |||   || || ||||| |||||||| ||||||||||||||   || |   |||     |    | | ||  |    |   | | | |  |       | |  ||| | ||  | | | |                                                                                                                      
GGATGTCCCATCTGTGGGAGGAAGATTAATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCTGCAGGACAAACAGGATTTGAAGCCAAAATGCAGgtgtgttatg--caaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgccacatgaatttgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacag

upper sequence: GLYMA20G34970.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G029134_T01 (Zea mays), 5'ss of exon 2
TGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACATGGCAGGATCAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaactttttgccaatttgatttcattttttaatcatgtagttctctgctgattagtatactatactgtcaatgaaattatag--------------------------------------------------------------------------------------------------------------------
 ||||| ||| ||||||||||  |  |||||||||| |||||||| ||||| ||||| || |||   || || ||||| |||||||| ||||||||||||||   || |   |||     |    | | ||  |    |   | | | |  |       | |  ||| | ||  | | | |                                                                                                                      
GGATGTCCCATCTGTGGGAGGAAGATTAATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCTGCAGGACAAACAGGATTTGAAGCCAAAATGCAGgtgtgttatg--caaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgcccaatgaattcgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacag

upper sequence: GLYMA20G34970.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0049g01350.t01 (Vitis vinifera), 5'ss of exon 3
TGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACATGGCAGGATCAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCAAAATGCAGgta--actttttgccaatttgatttcat-tttttaatcatgtagttctctgc-tgattagtatactatactgtcaatgaaattatag---------------------------------------------------
|||||| || |||||||||||  || | |||||||| |||||||| || || ||||||||||| ||||| |||||||||||||| || || ||||||||||||  |  | |||  | | |  | | || | ||| |  ||  |||| | ||| |  |   |  |  |   | |   | ||| | | |                                                   
TGATGTCCCTACTGTGGGAGGAAGGTTGATGCTTGTTGACATGGCTGGTTCTGAAAATATTGAGCAAGCTGGTCAAACTGGATTGGAAGCAAAAATGCAGgtagaatgtgttgaaattctattattatatctttgagtat-cagttgtttgcattgtatttccagcaccattttgcttaaagttttgtttccgcttaatgatgagcagcgctaatgtatgcttctggcatgatcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193353490|gb|FK319342.1|FK319342
EST:     CAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCAAAATGCAG                         ACTGCAAAAATCAATCAAGGAAATATAGCGCTGAAGAGAGTGGTGGAGTTC
genomic: CAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaacttttt ... gaaattatagACTGCAAAAATCAATCAAGGAAATATAGCGCTGAAGAGAGTGGTGGAGT-C