Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGACAGAAGTTCCAGAAGTCACTGCATGgtaaaaagctgctttggaagatggttctaattagacttgattggtaactgattacatgtctgtcttatattttttatcag
Basic information
species | Glycine max |
transcript | GLYMA20G34970.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G34970.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G062084_T01 (Zea mays), 5'ss of exon 2
TGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGACAGAAGTTCCAGAAGTCACTGCATGgtaaaaagctgctttggaagatggttctaattagacttgattggtaactgatta--catgtctgtcttatattttttatcag---
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TGAACCTGGAAGGATATCAAGAGAAGTTTCTAAAGTTGAAAAGCGAAGAACTGTGAAGAGCACACTTTGTAATGAGAGAAGTTCACGGAGCCATTGCGTGgttt---gttgcattcagccaccagcactgtcagcattcatttttaaaaaatcaagctttttcacactatgctttgcatctatag
upper sequence: GLYMA20G34970.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G062084_T02 (Zea mays), 5'ss of exon 2
--------------------------------------------------------TGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGACAGAAGTTCCAGAAGTCACTGCATGgtaaaaagctgctttggaagatggttctaattagacttgattggtaactgatta--catgtctgtcttatattttttatcag---
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GCGAGACTAGAAGTAATGGGGAAGAAAGCTAAGAATGCAACCTATATATCTGGAAATGAACCTGGAAGGATATCAAGAGAAGTTTCTAAAgttgaaaagcgaagaactgtgaagagcacactttgtaatgagagaagttcacggagccattgcgtggttt---gttgcattcagccaccagcactgtcagcattcatttttaaaaaatcaagctttttcacactatgctttgcatctatag
upper sequence: GLYMA20G34970.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G14330.1 (Arabidopsis thaliana), 5'ss of exon 2
TGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGACAGAAGTTCCAGAAGTCACTGCATGgtaaaaa--gctgctttggaagatggttctaattagacttg----attggtaactgatt--acatgtctgtcttatattttttatcag---
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AGAGGCTGGGAAGATTTCTAAAGAAATTGTCAAAGTGGAGAAACGGAGAATTGTGAAGAGTACACTTTGTAACGAAAGAAGTTCTCGGAGTCACTGCATTgtaagaacgatcttcttgattgatgtgtatgcatagctttatgcagcttatctctgttttaacttactagtgtggttgtttctttttgtag
upper sequence: GLYMA20G34970.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0049g01350.t01 (Vitis vinifera), 5'ss of exon 2
TGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGACAGAAGTTCCAGAAGTCACTGCATGgtaaaaagctgctttggaagatggttctaattagacttgattggtaa--ctgattacatgtctgtcttatattttttatcag-----------
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TGAAGCCGGAAAGATATCTAAAGAGATCCAAAAAGTGGAGAAGCGAAGAATTGTTAAAAGCACACTCTGTAATGACAGAAGCTCCAGAAGCCACTGCATGgtctgaatct--cttaaaactttattaggttatgacaacctttccaaatcttcttgctttataaactta-atcttctgtgtgcatttgcatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193353490|gb|FK319342.1|FK319342EST: AAGTTCCAGAAGTCACTGCATG GTAATCCTTTGATGTTCCAACTGTGGGAGGGCGGCTAGTGCTTGTAGACAT
genomic: AAGTTCCAGAAGTCACTGCATGgtaaaaagct ... tttttatcagGTAATCC-TTGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGACAGAAGTTCCAGAAGTCACTGCATGgtaaaaagctgctttggaagatggttctaattagacttgattggtaactgattacatgtctgtcttatattttttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT