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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagctgctttggaagatggttctaattagacttgattggtaactgattacatgtctgtcttatattttttatcagGTAATCCTTGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACATGGCAGGATCAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCA

Basic information

species Glycine max
transcript GLYMA20G34970.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34970.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0049g01350.t01 (Vitis vinifera), 3'ss of exon 2
---------gtaaaaagctgctttggaagatggt--tctaattagacttgattggtaactgattacatgtctgtcttatattttttatcagGTAATCCTTGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACATGGCAGGATCAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCA
             ||| ||   || |   |||     ||    | |  |  ||| |   | |    |  |||    | |   |||    || ||||||||||||| || |||||||||||  || | |||||||| |||||||| || || ||||||||||| ||||| |||||||||||||| || || |
gtctgaatctcttaaaactttattaggttatgacaacctttccaaatcttcttgctttataaactta-atcttctgtgtgcatttgcatagATAATCCTTGATGTCCCTACTGTGGGAGGAAGGTTGATGCTTGTTGACATGGCTGGTTCTGAAAATATTGAGCAAGCTGGTCAAACTGGATTGGAAGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193353490|gb|FK319342.1|FK319342
EST:     AAGTTCCAGAAGTCACTGCATG                         GTAATCCTTTGATGTTCCAACTGTGGGAGGGCGGCTAGTGCTTGTAGACAT
genomic: AAGTTCCAGAAGTCACTGCATGgtaaaaagct ... tttttatcagGTAATCC-TTGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaattagacttgattggtaactgattacatgtctgtcttatattttttatcagGTAATCCTTGATGTTCCAACTGTGGGAGGGCGGCTAATGCTTGTAGACATGGCAGGATCAGAAAATATTGAACAAGCCGGTCAAACTGGATTTGAGGCCA
                                            ttttttatc  CT-rich tract
                                   tgtcttatatttttta  TA-rich tract