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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttatgcttatctattttgtccttataatgttcattagccagtgcttgttcaaagtctctatcagatgcctggcattttcaagctagtttttttaccttggccgtgattttactggctattttctaaatattgcgagggtgctaatactttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACATTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA

Basic information

species Glycine max
transcript GLYMA20G34940.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34940.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G22340.3 (Arabidopsis thaliana), 3'ss of exon 3
gtaacttatgcttatctattttgtccttataatgttcattagccagtgcttgttcaaagtctctatcagatgcctggcattttcaagctagtttttttaccttggccgtgattttactggctattttctaaatattgcgagggtgctaatactttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACATTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA
                                                               ||   | |   || | ||||     ||   |  ||||  ||          |  |   | ||  |||  | || |        ||| |   |  |         ||||  ||    | || ||| ||| | ||||| ||||||||  |||| |||||||||||||| || || ||| |||| ||||| |||||||| |||||  ||||||| || |||   ||
-------------------------------------------------------------gttagttgttatatgaccttttgggttta--ctgattactgtgaggagagcaatgatttttgttcactagtt-ttac-------ttaaca---taatctctcctttttttgctgtggaattgtagGCTTTGTTTGGTTTATTCTCACGCTGAAAAAGAAGATGTACAAATATCAGTTTAGCCAATATGCATGGACACATATGATATTAATTGTGGTGTTTACTCA

upper sequence: GLYMA20G34940.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G62430.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaacttatgcttatctattttgtccttataatgttcattagccagtgcttgttcaaagtctctatcagatgcctggcatttt-caagctagttttttt--accttggccgtgattttactggctattttctaaatattgcgagggtgctaatactttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACATTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA
                                         | |||| |||| |  |    ||| ||   |   ||| ||||      ||||  |   |  |  | || | |||   |   |  || ||  |  |  || ||       |||| |||  |  || | ||    | |      | | |||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||  | || || || |||   ||
-----------------------------------------gtcagt-cttgcttcaccgttctgtcctctttgtggaatttgattttctagcatcggtgaaaataggtcttgacgct-tggcttagttgattcaccttacgt-----ttaatgcttatggaatatgcctcgatgt-aacaaatttcagGTTTCATGTGGTTCATTCTCACATTAAAGAAGAAGATGTACAAGTACCAGTTTGGCCAGTATGCTTGGACCCACATGATCTTGATAGTCGTGTTTACTCA

upper sequence: GLYMA20G34940.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0187g00380.t01 (Vitis vinifera), 3'ss of exon 4
gtaacttatgcttatctattttgtccttataatgttcattagccagtgcttgttcaaagtctctatcagatgcctggcattttcaagctagtttt--tttaccttggccgtgattttactggctattttctaaatattgcgagggtgctaatactttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACATTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA
                                                                          ||    ||| |   |  |||   ||||  ||  || |  | ||      |||||| | |||| |     | |||| | | |    |||     |  ||| |  | || |  |||| ||||||||||| ||||| || || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||  |||
--------------------------------------------------------------------------tgttgcttt-attttgatttccgtttatattttcctttgtctt-----ttatttttttaataatttattgctgctgaaatt---atta-----ctctttgtgtgatgggctcagGTTTTATGTGGTTTATTCTTACGTTAAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTAATTGTGGTGTTTACCCA

upper sequence: GLYMA20G34940.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 4
gtaacttatgcttatctattttgtccttataatgttcattagccagtgcttgttcaaagtctctatcagatgcctggcattttcaagctagtttttttaccttggccgtgattttactggctattttctaaatattgcgagggtgctaatactttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACATTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA
                                                                          ||    ||| |   |  |||   |   ||     |   ||| |    |||||| | |||| |     | |||| | | |    |||     |  ||| |  | || |  |||| ||||||||||| ||||| || || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||  |||
--------------------------------------------------------------------------tgttgcttt-attttgatttccgt---ttatattttcctttgccttttatttttttaataatttattgctgctgaaatt---atta-----ctctttgtgtgatgggctcagGTTTTATGTGGTTTATTCTTACGTTAAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTAATTGTGGTGTTTACCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattgcgagggtgctaatactttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACATTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA
            tgctaat  putative branch site (score: 2)
               taatacttt  TA-rich tract