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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatgcttattttactaagtatattgctttgtatttgtatttctattaattaacacctaagatgtttaatttatggcactaccactgtttgcttcagATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTTGGGGAAATTTTACAACAGGGGATTACAAGGAAATCTTAGATTCATGGCG

Basic information

species Glycine max
transcript GLYMA20G34940.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6483173|gb|AW202361.1|AW202361
EST:     AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAG                         ATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
genomic: AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAGgtaattatgc ... tttgcttcagATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
EST: gi|207826711|gb|GD800200.1|GD800200
EST:     AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAG                         ATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
genomic: AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAGgtaattatgc ... tttgcttcagATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
EST: gi|10252704|gb|BE820470.1|BE820470
EST:     AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAG                         ATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
genomic: AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAGgtaattatgc ... tttgcttcagATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
EST: gi|208290556|gb|GE087618.1|GE087618
EST:     AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAG                         ATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
genomic: AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAGgtaattatgc ... tttgcttcagATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
EST: gi|207731465|gb|GD706140.1|GD706140
EST:     AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAG                         ATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
genomic: AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAGgtaattatgc ... tttgcttcagATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
EST: gi|120534022|gb|EH262155.1|EH262155
EST:     AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAG                         ATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
genomic: AATCATTTGTTGTGCCGCAAACTCTCTCAGTTGAAATGATTTTGGACCAGgtaattatgc ... tttgcttcagATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT
EST: gi|22928342|gb|BU545481.1|BU545481
EST:     AGTTGAAATGATTTTGGACCAG                         ATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATANNNGAGGCTT
genomic: AGTTGAAATGATTTTGGACCAGgtaattatgc ... tttgcttcagATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattaattaacacctaagatgtttaatttatggcactaccactgtttgcttcagATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTTGGGGAAATTTTACAACAGGGGATTACAAGGAAATCTTAGATTCATGGCG
                                             tttgcttc  CT-rich tract
               taagatgtttaattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattatgcttattttactaagtatattgctttgtatttgtatttctattaattaacacctaagatgtttaatttatggcactaccactgtttgcttcagATATTGATCAACCTAACATTCGATGAACAAGAAGCTCTATATTGGAGGCTTGGGGAAATTTTACAACAGGGGATTACAAGGAAATCTTAGATTCATGGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA