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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctacacaattcattactcatgcagcagtacaataatccttttcatgattaactaatggccagaacctttttttttttaaaaaaaatagtaactcgtcattgacatatatcatttcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGGATTCTGAGTCAACGCCTGGTTAACACAGTAACTTCAGACATGGTTTTATATCGGCTAGTG

Basic information

species Glycine max
transcript GLYMA20G34940.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34940.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------------------------------gtatctacacaattcattactcatgcagcagtacaataatccttttcatgat--taactaatggccagaacctttttttttttaaaaaaaatagtaactcgtcattgacatatatcatttcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGGATTCTGAGTCAACGCCTGGTTAACACAGTAACTTCAGACATGGTTTTATATCGGCTAGTG
                                                              ||      |    |||| ||         | |   |   |||  | ||  | || ||    |      |  ||| | ||| |    ||| | |||  |   | | || | |    ||||||| ||||||||||| |||||| ||||||| ||||| || ||||| |||||||| ||||| || ||||||||| | ||||   | ||||||  ||| |||
gtaagtgtaccagtttactatccatagattgatggaatgttgttgtttcatggaaagctctcctgagtgttctgctactgattatttgaagctaatgtttattttgtaatattgaccaagttactttggatgctttatattacatttgatatttacttatt-ctcagatttttttactcagGCACTTTTTCTTCACAGCAATGCTATTTGTATATGGCCGCATTCTCAGTCAACGGCTGGTCAATACAGTAACTCCTGACAAATTCTTATATAAGCTTGTG

upper sequence: GLYMA20G34940.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0187g00380.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------------------------------gtatctacacaattcattactcatgcagcagtac-aataatcctttt-catgattaactaatggccagaacctttttttttttaaaaaaaatagtaactcgtcattgacatatatcatttcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGGATTCTGAGTCAACGCCTGGTTAACACAGTAACTTCAGACATGGTTTTATATCGGCTAGTG
                                                              ||      |    |||| ||         | |||  |  ||||  |  ||| || ||    |      |  ||| | ||| |    ||| | |||  |   | | || | |    ||||||| ||||||||||| |||||| ||||||| ||||| || ||||| |||||||| ||||| || ||||||||| | ||||   | ||||||  ||| |||
gtaagtgtaccagtttactatccatagattgatggaatgttgttgtttcatggaaagctctcctgagtgttctgctactgattatttgaagctaatgtttattttgtaaaattgaccaagttactttggatgctttatattacatttgatatttacttatt-ctcagatttttttactcagGCACTTTTTCTTCACAGCAATGCTATTTGTATATGGCCGCATTCTCAGTCAACGGCTGGTCAATACAGTAACTCCTGACAAATTCTTATATAAGCTTGTG

upper sequence: GLYMA20G34940.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S106_169V6.1 (Physcomitrella patens), 3'ss of exon 1
gtatctacacaattcattactcatgcagcagtacaataatccttttcatgattaactaatggccagaacctttttttttttaaaaaaaatagtaactcgtcattgacatatatca--tttcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGGATTCTGAGTCAACGCCTGGTTAACACAGTAACTTCAGAC---ATGGTTTTATATCGGCTAGTG
             |||  | || | |      |||| ||| |||   ||   | |||       |  | |   | |  |||| ||||   | |       || | || |  |||   |||||||||||||||| | || || ||||||| ||||||||||||  || |||   | |  ||||| || ||  |   |   |||   ||| |   | | |   |    
-------------tcaccattcgttcc----cacaa-aatgcttgcaatttcttacttg-----aacatcaaatatgatttataaaacgcatttgactaacagttacttggatcggttttcagGCATTTTTTCCTTACGGCGATGTTATATGTTTATGGACGCTTTTTGAACAAGCATCTGGTGAAGACTATTTATAGTGACCACATGATCCCACACCTTTTC---


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacctttttttttttaaaaaaaatagtaactcgtcattgacatatatcatttcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGGATTCTGAGTCAACGCCTGGTTAACACAGTAACTTCAGACATGGTTTTATATCGGCTAGTG
                                              tcatttc  CT-rich tract
     ttttttttttaaaaaa  TA-rich tract