1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTTATTCAAAATTAGAGGAAAAGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAGgtgcaacactttctcaagtatcttcaacactaggaaatatattgcaattctgttacttctttttataagctcataagttagttttttctctctgattccttcatcaatttctaaacatttaag
species | Glycine max |
transcript | GLYMA20G34780.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAG GAAGAGATGGAGGAAGCTATCEST: gi|193703750|gb|FK634722.1|FK634722
genomic: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAGgtgcaacact ... aacatttaagGAAGAGATGGAGGAAGCTATC
EST: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAG GAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAAEST: gi|6482098|gb|AW201369.1|AW201369
genomic: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAGgtgcaacact ... aacatttaagGAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAA
EST: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAG GAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAAEST: gi|10236980|gb|BE805868.1|BE805868
genomic: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAGgtgcaacact ... aacatttaagGAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAA
EST: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAG GAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAAEST: gi|193649840|gb|FK595451.1|FK595451
genomic: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAGgtgcaacact ... aacatttaagGAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAA
EST: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAG GAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAAEST: gi|192309425|gb|FK000941.1|FK000941
genomic: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAGgtgcaacact ... aacatttaagGAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAA
EST: GGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAG GAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAAEST: gi|17153596|gb|BM143529.1|BM143529
genomic: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAGgtgcaacact ... aacatttaagGAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAA
EST: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAG GAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAA
genomic: AGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAGgtgcaacact ... aacatttaagGAAGAGATGGAGGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTATTCAAAATTAGAGGAAAAGCAGCAAGCAATGGAAGCTGAGAAGAATCAAAGTGAAGCTAGGACCAAGgtgcaacactttctcaagtatcttcaacactaggaaatatattgcaattctgttacttctttttataagctcataagttagttttttctctctgattccttcatcaatttctaaacatttaag
- - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC