1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtctaattcattgctaaactgtttatggttaattttgtctcattactatttattcacaattagtcttgaagcttttgttttgtctgctttctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCAAT
species | Glycine max |
transcript | GLYMA20G34780.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTGAACNNNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAGEST: gi|5687809|gb|AI940881.1|AI940881
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
EST: CTTTGAACNNNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAGEST: gi|192331631|gb|FK023449.1|FK023449
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
EST: CTTTGAACNNNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAGEST: gi|5687837|gb|AI940816.1|AI940816
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
EST: CTTTGAACNNNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAGEST: gi|192309425|gb|FK000941.1|FK000941
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
EST: CTTTGAAC-NNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAGEST: gi|17153596|gb|BM143529.1|BM143529
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
EST: CTTTGAACNNNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
ctatttattcacaattagtcttgaagcttttgttttgtctgctttctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCAAT
cttttgttttgtctgc CT-rich tract
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctaattcattgctaaactgtttatggttaattttgtctcattactatttattcacaattagtcttgaagcttttgttttgtctgctttctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC