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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCGTCCTGCTTTTGAAGAAGACAACAAGGGCAGTAACGAGAGAAAATCTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctgatgttgaatctgcttcctcctttaagttttagatattatctattgcatattcatctatagttccgaaccagacagcttaaacttttgatg...

Basic information

species Glycine max
transcript GLYMA20G34780.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15199929|gb|BI424081.1|BI424081
EST:     CTTTGAACNNNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG                         TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
EST: gi|5687809|gb|AI940881.1|AI940881
EST:     CTTTGAACNNNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG                         TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
EST: gi|192331631|gb|FK023449.1|FK023449
EST:     CTTTGAACNNNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG                         TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
EST: gi|5687837|gb|AI940816.1|AI940816
EST:     CTTTGAACNNNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG                         TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
EST: gi|192309425|gb|FK000941.1|FK000941
EST:     CTTTGAAC-NNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG                         TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
EST: gi|17153596|gb|BM143529.1|BM143529
EST:     CTTTGAACNNNNNNNNTGTGCTATCTCCCAATCTGTTTAAACAGAATCAG                         TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG
genomic: CTTTGAACAAAAAAAATGTGCTATCTCCCAATCTGTTTAAACAGAATCAGgtatatgctg ... ctccttgcagTTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAG