1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agctgaaaaactgctcattgaaattgtgaaagatctagttatgtagacatatttttcaacttctgtgcttgacgaaagttgagtatcatgtctgggccagCTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAACAATGGTGCAGTTAATTTATCTGAAGGTGACAAGGAGAAAGGAGCTGGAA
species | Glycine max |
transcript | GLYMA20G34780.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCCAAGCTTTTACCATGAAGGGCCTCCTCCTAAGGTTGAATTGAAGAAG CTTCCAGCCACGCGAGCAAAATCTCCAAAGEST: gi|10236980|gb|BE805868.1|BE805868
genomic: TGCCAAGCTTTTACCATGAAGGGCCTCCTCCTAAGGTTGAATTGAAGAAGgtttgtactg ... tctgggccagCTTCCAGCCACGCGAGCAAAATCTCCAAAG
EST: TGCCAAGCTTTTACCATGAAGGGCCTCCTCCTAAGGTTGAATTGAAGAAG CTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAACEST: gi|6725249|gb|AW309648.1|AW309648
genomic: TGCCAAGCTTTTACCATGAAGGGCCTCCTCCTAAGGTTGAATTGAAGAAGgtttgtactg ... tctgggccagCTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAAC
EST: TGCCAAGCTTTTACCATGAAGGGCCTCCTCNTAAGGTTGAATTGAAGAAG CTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAACEST: gi|192331632|gb|FK023450.1|FK023450
genomic: TGCCAAGCTTTTACCATGAAGGGCCTCCTCCTAAGGTTGAATTGAAGAAGgtttgtactg ... tctgggccagCTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAAC
EST: AAGGTTGAATTGAAGAAG CTTCCGGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAACEST: gi|192330167|gb|FK020512.1|FK020512
genomic: AAGGTTGAATTGAAGAAGgtttgtactg ... tctgggccagCTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAAC
EST: TGCCAAGCTTTTACCATGAAGGGCCTCCTCCTAAGGTTGAATTGAAGAAG CTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAACEST: gi|192309425|gb|FK000941.1|FK000941
genomic: TGCCAAGCTTTTACCATGAAGGGCCTCCTCCTAAGGTTGAATTGAAGAAGgtttgtactg ... tctgggccagCTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAAC
EST: TGCCAAGCTTTTACCATGAAGGGCCTCCTCCTAAGGTTGAATTGAAGAAG CTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAAC
genomic: TGCCAAGCTTTTACCATGAAGGGCCTCCTCCTAAGGTTGAATTGAAGAAGgtttgtactg ... tctgggccagCTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAAC
gacatatttttcaacttctgtgcttgacgaaagttgagtatcatgtctgggccagCTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAACAATGGTGCAGTTAATTTATCTGAAGGTGACAAGGAGAAAGGAGCTGGAA
gcttgac putative branch site (score: 4)
atttttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgaaaaactgctcattgaaattgtgaaagatctagttatgtagacatatttttcaacttctgtgcttgacgaaagttgagtatcatgtctgggccagCTTCCAGCCACGCGAGCAAAATCTCCAAAGCTGGGTCGGCGAAAGAGCAACAATGGTGCAGTTAATTTATCTGAAGGTGACAAGGAGAAAGGAGCTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
agctgaa
- - - - - ctgctca
- - - - - - - - - - - - - - - - - - - -tatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgtgc