1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctgttatgtatgtcaatacagaactgtaaaacacactatgctgatgattgtggcatttcaatcaattcaattaatttggttgacatttgtttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCATGTTGTAGTCTATTCAGATGGCATTTCCCATGATTCAGGTCATGAAGCT
species | Glycine max |
transcript | GLYMA20G34780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCAEST: gi|298169286|gb|HO020646.1|HO020646
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCAEST: gi|6566567|gb|AW234210.1|AW234210
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCAEST: gi|19345921|gb|BM890801.1|BM890801
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: ACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCAEST: gi|4396201|gb|AI495198.1|AI495198
genomic: ACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: CACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCAEST: gi|213591793|gb|DB973386.1|DB973386
genomic: CACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCAEST: gi|208318266|gb|GE110243.1|GE110243
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCAEST: gi|298170465|gb|HO019089.1|HO019089
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAGCTCAAAAT TGCAATGGGAGTAGAGGATACAGATATTTGTATCATCAAGGAGCCAGATCAEST: gi|207702758|gb|GD684760.1|GD684760
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGEST: gi|4292324|gb|AI437746.1|AI437746
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAG
EST: TCCAGATCCAACTCAAAAT TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCAEST: gi|192331631|gb|FK023449.1|FK023449
genomic: TCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
tgattgtggcatttcaatcaattcaattaatttggttgacatttgtttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCATGTTGTAGTCTATTCAGATGGCATTTCCCATGATTCAGGTCATGAAGCT
tttgttt CT-rich tract
atttcaatcaattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgttatgtatgtcaatacagaactgtaaaacacactatgctgatgattgtggcatttcaatcaattcaattaatttggttgacatttgtttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCATGTTGTAGTCTATTCAGATGGCATTTCCCATGATTCAGGTCATGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - -tgtatgt
- - - - - - - caataca
- - - - - - - - - - - - - - - aacacac
- - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caattca