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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACAAAACTCGAAGCAGAAACTCAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcattctccactcttcctttccatctctatacatcaaaatgcacattctttctttctgagatcccttttaatccttgtttctgtttttttttttt...

Basic information

species Glycine max
transcript GLYMA20G34780.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814045|gb|BI786320.1|BI786320
EST:     CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT                         TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|298169286|gb|HO020646.1|HO020646
EST:     CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT                         TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|6566567|gb|AW234210.1|AW234210
EST:     CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT                         TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|19345921|gb|BM890801.1|BM890801
EST:     ACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT                         TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: ACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|4396201|gb|AI495198.1|AI495198
EST:     CACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT                         TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: CACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|213591793|gb|DB973386.1|DB973386
EST:     CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT                         TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|208318266|gb|GE110243.1|GE110243
EST:     CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT                         TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|298170465|gb|HO019089.1|HO019089
EST:     CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAGCTCAAAAT                         TGCAATGGGAGTAGAGGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|207702758|gb|GD684760.1|GD684760
EST:     CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT                         TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAG
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAG
EST: gi|4292324|gb|AI437746.1|AI437746
EST:     TCCAGATCCAACTCAAAAT                         TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: TCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|192331631|gb|FK023449.1|FK023449
EST:     CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAAT                         TGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: CAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcatt ... tttgttgcagTGCAATGGGAGTAGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGACAAAACTCGAAGCAGAAACTCAACTCACCAACACAGTTGCATTATTTTCTTTCCAGATCCAACTCAAAATgtgagtcattctccactcttcctttccatctctatacatcaaaatgcacattctttctttctgagatcccttttaatccttgtttctgtttttttttttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatctct