Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGATGATGCCAGGCTCTATTGCACAAATGATGTGGGTGGTCCACCACAGgtaaattcgaacatttttgcacgctcttgtgatgaaatgattaatttcacactttactagtattaatttaaatgtcaaaaaggtaacaagcttgtaacacattacag

Basic information

species Glycine max
transcript GLYMA20G34760.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34760.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G04280.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGATGATGCCAGGCTCTATTGCACAAATGATGTGGGTGGTCCACCACAGgtaaattcgaacatttttgcacgctcttgtgatgaaatgattaatttcacactttactagtattaatttaaatgtcaaaaaggtaacaagcttgtaacacattacag
||| || ||||| ||||||||||||||||| ||||  | |||  | ||||||||| | || ||||| |||||||| |||| ||| |||||||| |||  |||||||| |       |   | |    | | |  ||   ||||   |  |  |||  | | |   ||    ||||        |||   | | ||    ||      
GAATTCACACAAGAGATTTGCTAATGCATTCCCAAAGTATTGTGAGCTTGTTGATAACGCTAGGCTTTATTGCACCAATGCTGTTGGTGGTCCTCCAAGGgtaaattag-------tcaaaagtcaatatca--aatctattacgatgtcgtttt--tgggagagatactgatgtgtgtgttttaattggttggtggagcag-----

upper sequence: GLYMA20G34760.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0020g04850.t01 (Vitis vinifera), 5'ss of exon 8
GAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGATGATGCCAGGCTCTATTGCACAAATGATGTGGGTGGTCCACCACAGgtaa--attcgaacatttttgcacgctcttgtgatgaaatgattaatttcacactttactagtattaatttaaatgtcaaaaaggta-acaagcttgtaacacattacag-----------------------------------
|||||| ||||| |||||||| | ||| ||||  ||||  ||| ||||||||||| ||||||||||||||||||| ||||   |||| || |||||    ||||  || |  |   || |||      || |  |  ||||   |||   | ||| ||||  |      ||| |            | ||    ||||      | || |                                   
GAAATCCCACAAGAGATTTGCAAGTGCGTTTCAGAGATACTGCCAACTTGTTGATAATGCCAGGCTCTATTGCACCAATGCCATGGGCGGCCCACCCAGCgtaataatgcttaatcttgtgcctagctttttagtttaatgtggaat---agactctactgctgaatgcttatactcttttgctacatactcctttgttgtttgtaactgtcatttactaactttattagtacaaattaatacag