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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGTGGTTGAGGCAGATGCTTTTAAGGAGAGTGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGATCCAAACTGCTGAATTGgtatgcttctgtgtgaaccatgacctccatgttattattatcattttcccactaaactggtcactatcgtatgtgcagcatgtgactaatgttatagaaa...

Basic information

species Glycine max
transcript GLYMA20G34760.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34760.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G04280.1 (Arabidopsis thaliana), 5'ss of exon 6
TGTGGTGGTTGAGGCAGATGCTTTTAAGGAGAGTGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGATCCAAACTGCTGAATTGgtatgcttctgtgtgaacca--tgacc-tccatgttattattatcattttcccactaaactggtcactatcgtatgtgcagcatgtgactaatgttatagaaa
 |||||  | |||||||| || ||||||||||  || || || |||||||| |||||||| ||||||||||| ||||| ||| | |||||||||||||||||| | |  | |  |  | |  |  || |||  | |  | |    || ||     | |||  |  ||  |  | ||   |     | |   || || |||   
GGTGGTTATAGAGGCAGACGCGTTTAAGGAGACGGATGTAATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAAACTGCTGAATTGgtacgttgttcttagttctagctagccatcctcgattgtgtatatatatttggctttaacatgctacatt--tctggttatttccttatatatattttag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125231|gb|BG315801.1|BG315801
EST:     CCCTTAGCTCCAGAGGTCACCATGATGACATGATCCAAACTGCTGAATTG                         GTGCATCAATCTTCCACTGATGCTGCATCATCTCTGCTGGTGACAGCTCTA
genomic: CCCTTAGCTCCAGAGGTCACCATGATGACATGATCCAAACTGCTGAATTGgtatgcttct ... atttgaacagGTGCATCAATCTTCCACTGATGCTGCATCATCTCTGCTGGTGACAGCTCTA