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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatgcttgtgaattctgccatgttactagtttgggaattgaatttgtggatatatatgaaagttaacatttcccattggaattttgacagGAGAGCTATTATGACAGGGAGGGCAGTGAGGGTGAATTCACAATTGAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGAT

Basic information

species Glycine max
transcript GLYMA20G34760.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34760.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G04280.1 (Arabidopsis thaliana), 3'ss of exon 7
---------------gtatttatgcttgtgaattctgccatgttactagtttgggaattga-atttgtggatatatatgaaagttaacatttccca--ttggaattttgacagGAGAGCTATTATGACAGGGAGGGCAGTGAGGGTGAATTCACAATTGAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGAT
               || || |   ||  |||   |    |||      ||||  | | |   || |  | ||| ||| |   | | | |  || |  || |  |||| | ||||||||| | |||     ||| |||||||| |||||  |||||||||| || ||||| ||||||||||||||||| ||||  | |||  | |||||||||
gtaaagattcatcaagttttcacattttcgaaaa-tattttgtagtc--tttgttactcgttgttagctgctat-tatcatgctaatcgtaaccaaattttgtttttttatagGAGAGCTCTAATGGTGAAGAGAGCAGTGAGAGTGAAACCACAATTGAATTCACACAAGAGATTTGCTAATGCATTCCCAAAGTATTGTGAGCTTGTTGAT

upper sequence: GLYMA20G34760.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0020g04850.t01 (Vitis vinifera), 3'ss of exon 7
------------------------------------------------------------------gtatttatgc--ttgtgaattctgccatgttactagtttgggaattgaatttgtggatatata--tgaaagttaaca---tttcccattggaattttga--cagGAGAGCTATTATGACAGGGAGGGCAGTGAGGGTGAATTCACAATTGAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGAT
                                                                   ||  |||||  || |  | | ||  ||| |||||    |  | || |  | |||   | ||   | |||  | |||   |     |||  |   ||||  |||||||||||| ||||||    | |||||||||||||| ||||| |||||||| ||||| |||||||| | ||| ||||  ||||  ||| |||||||||||
gtaaaattttgtatgaacttcaacatttttatgttaagaggaacaggattgtctggatgagatacattaaatatgccatttttcagtttgagatgctactaa--ggcaacttaagctagtgtgcaaatcattcaaaactgacagggtcatatattttatacttgaaacagGAGAGCTATAATGACAAAACGAGCAGTGAGGGTGAACTCACAGTTGAAATCCCACAAGAGATTTGCAAGTGCGTTTCAGAGATACTGCCAACTTGTTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgaatttgtggatatatatgaaagttaacatttcccattggaattttgacagGAGAGCTATTATGACAGGGAGGGCAGTGAGGGTGAATTCACAATTGAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGAT
                         agttaac  putative branch site (score: 3)
              atatatatgaaagtta  TA-rich tract