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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggcttgctctcctaggtttgaaatgaataaaagttgtcattcttaaatttacttttccagttttgatctttgttttggtcctaaagaattataaccctgattacttttttttcctctagCTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTATAGATCTAATAACCCTGAATACTATTTACTGCTGAATGATTTCATTCAG

Basic information

species Glycine max
transcript GLYMA20G34490.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214005010|gb|DB985648.1|DB985648
EST:     CTATTCGTGCTTGGCAGTACATTTGGATCTTATCTTCTG                         CTCTTGTATCTGGGGCTTTCTACTCTTAGTCTATATGATTTTTACAACTAT
genomic: CTATTCGTGCTTGGCAGTACATTTGGATCTTATCTTCTGgtaagggctt ... tttcctctagCTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTAT
EST: gi|192318942|gb|FK006838.1|FK006838
EST:     TTGGAGGAATTCTATTCGTGCTTGGCAGTACATTTGGATCTTATCTTCTG                         CTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTAT
genomic: TTGGAGGAATTCTATTCGTGCTTGGCAGTACATTTGGATCTTATCTTCTGgtaagggctt ... tttcctctagCTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTAT
EST: gi|120529164|gb|EH257298.1|EH257298
EST:     TTGGAGGAATTCTATTCGTGCTTGGCAGTACATTTGGATCTTATCTTCTG                         CTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTAT
genomic: TTGGAGGAATTCTATTCGTGCTTGGCAGTACATTTGGATCTTATCTTCTGgtaagggctt ... tttcctctagCTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTAT
EST: gi|22933850|gb|BU550989.1|BU550989
EST:     TTGGAGGAATTCTATTCGTGCTTGGCAGTACATTTGGATCTTATCTTCTG                         CTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTAT
genomic: TTGGAGGAATTCTATTCGTGCTTGGCAGTACATTTGGATCTTATCTTCTGgtaagggctt ... tttcctctagCTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTAT
EST: gi|192329478|gb|FK022198.1|FK022198
EST:     TTGGAGGAATTCTATTCGTGCTTGGCAGTACATTTGGATCTTATCTTCTG                         CTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTAT
genomic: TTGGAGGAATTCTATTCGTGCTTGGCAGTACATTTGGATCTTATCTTCTGgtaagggctt ... tttcctctagCTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctttgttttggtcctaaagaattataaccctgattacttttttttcctctagCTCTTGTATCTGGGGCTTTCTACTCCAATTCTATATGATTTTTACAACTATAGATCTAATAACCCTGAATACTATTTACTGCTGAATGATTTCATTCAG
                              ccctgattactttttt  CT-rich tract
                                 tgattactttttttt  TA-rich tract