1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctatcaaatgttgtgttgttaaagtaattattagtttgctaataatactattgaagcaacatttagtatttttgtatttatatagaatgtatgttgctagGTTTAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCCCAAGTTCACTGTTCTGAAGAGAAATTTATCCTCCAAACTGGGGGTAAAG
species | Glycine max |
transcript | GLYMA20G34490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGGTCGCGTCCTCTTTGCTTCCCTCTTCATCCTCTCAGCATGGCAGAT GTTTAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCCEST: gi|120529164|gb|EH257298.1|EH257298
genomic: CTGGGTCGCGTCCTCTTTGCTTCCCTCTTCATCCTCTCAGCATGGCAGATgtcagtcctc ... atgttgctagGTTTAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCC
EST: CTGGGTCGCGTCCTCTTTGCTTCCCTCGTCATCCTCTCAGCATGCCAGAT GTTTAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCCEST: gi|22933850|gb|BU550989.1|BU550989
genomic: CTGGGTCGCGTCCTCTTTGCTTCCCTCTTCATCCTCTCAGCATGGCAGATgtcagtcctc ... atgttgctagGTTTAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCC
EST: NNGGGTCGCGTCCTCTTTGCTTCCCNCTTCATCCTCTCAGCATGGCAGAT GNNNAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCCEST: gi|192329478|gb|FK022198.1|FK022198
genomic: CTGGGTCGCGTCCTCTTTGCTTCCCTCTTCATCCTCTCAGCATGGCAGATgtcagtcctc ... atgttgctagGTTTAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCC
EST: CTGGGTCGCGTCCTCTTTGCTTCCCTCTTCATCCTCTCAGCATGGCAGAT GTTTAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCC
genomic: CTGGGTCGCGTCCTCTTTGCTTCCCTCTTCATCCTCTCAGCATGGCAGATgtcagtcctc ... atgttgctagGTTTAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCC
tactattgaagcaacatttagtatttttgtatttatatagaatgtatgttgctagGTTTAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCCCAAGTTCACTGTTCTGAAGAGAAATTTATCCTCCAAACTGGGGGTAAAG
aacatttagtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatcaaatgttgtgttgttaaagtaattattagtttgctaataatactattgaagcaacatttagtatttttgtatttatatagaatgtatgttgctagGTTTAATGAATTTGATGACACTGGTGGACCCATTGCAAAGGAGTTGATTCCCAAGTTCACTGTTCTGAAGAGAAATTTATCCTCCAAACTGGGGGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - tgttgtg