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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGCATAGACATCCAGAGAAAATTATTTTGTAGCATACAATTGgtgagttttacatgttgagcttggtatataattatatcttaatattacatgttgattggaaggaattgacacatttttctggaatag

Basic information

species Glycine max
transcript GLYMA20G34470.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34470.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv05s0049g00190.t01 (Vitis vinifera), 5'ss of exon 16
GTCGCATAGACATCCAGAGAAAATTATTTTGTAGCATACAATTGgtgagttttacatgttgagcttggtatataattatatcttaatattacatgttgattgg-----aaggaattgacacatttttctggaatag
| || |||||| ||||||||||||||||||||||||| ||| ||||||||||   | | |     || || ||  ||||||   ||||||| || ||  ||        |  || |||   | || | ||   |||
GGCGTATAGACCTCCAGAGAAAATTATTTTGTAGCATGCAACTGgtgagtttggaa-gcta----tgataaattgttatattccaatattaaatattcctttatctctgaaaaactgatgtaattctgtgctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258787|gb|BE346934.1|BE346934
EST:     GTCGCATAGACATCCAGAGAAAATTATTTTGTAGCATACAATTG                         ACTGGTGGGGTGGCTTTGACAAGTGGCTTAGTTGCAGCAGTAGAAGA
genomic: GTCGCATAGACATCCAGAGAAAATTATTTTGTAGCATACAATTGgtgagtttta ... tctggaatagACTGGTGGGGTGGCTTTGACAAGTGGCTTAGTTGCAGCAGTAGAAGA