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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttgtcctttttttcatttcatacacataattttgaagccttgtttaactgctgggttttgtattcacagGTCGCATAGACATCCAGAGAAAATTATTTTGTAGCATACAATTG

Basic information

species Glycine max
transcript GLYMA20G34470.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34470.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv05s0049g00190.t01 (Vitis vinifera), 3'ss of exon 15
-----------------------gtaattttgtcctttttttca--tttcatacacataattttgaagccttgtttaactgctgggttttgtattcacagGTCGCATAGACATCCAGAGAAAATTATTTTGTAGCATACAATTG
                       |   ||    |||       |  ||||    | |  ||||   |  ||  || | |||   |||   || || ||||| || |||||| ||||||||||||||||||||||||| ||| ||
ttggcattggactttcagaaagtgggtttccaacctaagacctaagtttccacgaaactatttatgattctaattaagctgtctggtaccgtgttgacagGGCGTATAGACCTCCAGAGAAAATTATTTTGTAGCATGCAACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258787|gb|BE346934.1|BE346934
EST:     AGAGAAAGTTGGCCTTGCAGAGGCTATTACTAACTGCATTCTCTCAACTG                         GTCGCATAGACATCCAGAGAAAATTATTTTGTAGCATACAATTG
genomic: AGAGAAAGTTGGCCTTGCAGAGGCTATTACTAACTGCATTCTCTCAACTGgtaattttgt ... gtattcacagGTCGCATAGACATCCAGAGAAAATTATTTTGTAGCATACAATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcatacacataattttgaagccttgtttaactgctgggttttgtattcacagGTCGCATAGACATCCAGAGAAAATTATTTTGTAGCATACAATTG
                           gtttaac  putative branch site (score: 3)
     atacacataatttt  TA-rich tract