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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgactttgatgtgtaacacatatacagctatagttagaatttgaaataacaatggataatgaatgtgttagaatttttaaaatctaattttgtcttaattttgtcttaatcttgtctctcttttttcgttcttccttctagGGGCCCTGTCTGAAGAGAATCTCCTCTTTCTGGAGGCATGGAGAACAATTGACCGAGCGTACATTGATAAAAGTTTTAATGGACAGAGTTGGTTTAGGTA

Basic information

species Glycine max
transcript GLYMA20G34110.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34110.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G17740.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtgactttgatgtgtaacacatatacagctatagttagaatttgaaataacaatggataatgaatgtgttagaatttttaaaatctaattttgtcttaattttgtcttaatcttgtctctcttttttcgttcttccttctagGGGCCCTGTCTGAAGAGAATCTCCTCTTTCTGGAGGCATGGAGAACAATTGACCGAGCGTACATTGATAAAAGTTTTAATGGACAGAGTTGGTTTAGGTA
                                               | ||   |  |   |  |  |||| | ||||    || ||  |           |||||  | | |   |||| |  |||||||  |   ||  | ||||||  ||  ||||||||||||| ||||| || ||||| |||||||||||||| || || || ||||||||||  ||||||||||| || |||||| | ||
-----------------------------------------------gtaagttctgttttttttacatgt-tgagaaaccatataaatttcggggaatgcaatttgatttca--tttgtgtggctttttttctctgtctctttagGGGGTCTTACTGAAGAGAATCTTCTCTTCCTCGAGGCTTGGAGAACAATTGATCGTGCTTATATTGATAAAACCTTTAATGGACAAAGCTGGTTTCGTTA

upper sequence: GLYMA20G34110.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0077g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtgactttgatgtgtaacacatatacagctatagttagaatttgaaataacaatggataatgaatgtgttagaatttttaaaatctaa-ttttgtcttaattttgtcttaatcttgtctctcttttttcgttcttccttctagGGGCCCTGTCTGAAGAGAATCTCCTCTTTCTGGAGGCATGGAGAACAATTGACCGAGCGTACATTGATAAAAGTTTTAATGGACAGAGTTGGTTTAGGTA
               ||  |     | |  | |   |  | ||| |   ||||    ||   |||||||     |    |   |  ||      ||||| || |||||     | | | |  | |  |  ||  | |        |||||||||  ||||||| |||||||| ||  | ||||||||||| ||||||||||| || ||  |||| ||||  |||||||| || ||||||||| | ||
---------------gta-agtttgtttttatcataaaatggaactctgaatattgttgtggaatgaattgagcatgtgtccaaggattggggctttgtttttattttacaccattatagaattttgtcattgatgc--------agGGGCCCTCACTGAAGAAAATCTCCTTTTCTTAGAGGCATGGAGGACAATTGACCGTGCATATGTTGACAAAACATTTAATGGTCAAAGTTGGTTTCGCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgtcttaattttgtcttaatcttgtctctcttttttcgttcttccttctagGGGCCCTGTCTGAAGAGAATCTCCTCTTTCTGGAGGCATGGAGAACAATTGACCGAGCGTACATTGATAAAAGTTTTAATGGACAGAGTTGGTTTAGGTA
                 tcttaat  putative branch site (score: 3)
            ttttgtcttaatcttg  CT-rich tract
        ttaattttgtcttaat  TA-rich tract