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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATCCAATCAGTTTTTGAGCTCTCTGATGGCTCTGGATTGGTTGTTACTGTTGCTCGCTACGAGACACCTGCACATACAGATATTGACAAGgtttgctcttgattctccacctcctaaactggtttcgtccgctaacacccggcatttgcatgtag

Basic information

species Glycine max
transcript GLYMA20G34110.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34110.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G379002_T01 (Zea mays), 5'ss of exon 12
GAAGATCCAATCAGTTTTTGAGCTCTCTGATGGCTCTGGATTGGTTGTTACTGTTGCTCGCTACGAGACACCTGCACATACAGATATTGACAAGgtt----tgctcttgattctccacctcctaaactggtttcgt-ccgctaacaccc---ggcatttgcatgtag---------------------
|||||| || || ||||| |   | |||||||| ||||| |||| |||||| || || ||||| || || ||||||||||| || |||||||||||     |   | |     |   |||   ||     ||| || || || |        |   |||    ||||                     
GAAGATTCAGTCGGTTTTCGGATTATCTGATGGATCTGGCTTGGCTGTTACCGTAGCACGCTATGAAACTCCTGCACATACCGACATTGACAAGgtaagagtaagcatagcaattggcctaaaaacagaatttggtgccacttatgattttagctgtttctgagtagttgtgaatgatatttttttag

upper sequence: GLYMA20G34110.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv05s0077g00060.t01 (Vitis vinifera), 5'ss of exon 13
GAAGATCCAATCAGTTTTTGAGCTCTCTGATGGCTCTGGATTGGTTGTTACTGTTGCTCGCTACGAGACACCTGCACATACAGATATTGACAAGgtttgctcttgattctccacctcctaaactggtttcgtccgctaacacccggcatttgcatgtag--------------------------------------------------
 |||||||| || ||||||||||| || ||||| || || ||||  ||||| || ||||| || ||||||||||| || |  |||||||||||||||||    | |||||    | |       |  |  |   |    |||  ||||   ||| | |                                                   
CAAGATCCAGTCGGTTTTTGAGCTATCAGATGGTTCGGGCTTGGCCGTTACAGTAGCTCGTTATGAGACACCTGCTCACATTGATATTGACAAGgtttggctctaattcttggtccctcttttcgagtgtgcgagtgtgcacagggca---gcaggcaaaccatgcatatcttactgtccctgtttcttttatttttcttgcactttag