Sequence
atgc intronic sequence ATGC exonic sequenceAGGGGTGATTGTGTATATTTGTGATAGTCGTGGTGTTCGAGATATACTTGATACAGATGGAAGTAGTGCACTAGCAACTTCAGAACCCCTGGTTGTACTGgtatgtttttgctttcttctgttgcacagtaatagtattgagtagagttggcccaaatgcatggtaggtaaatatgatagttctcattttattttcatgg...
Basic information
species | Glycine max |
transcript | GLYMA20G34110.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G34110.1 (Glycine max), 5'ss of exon 11
lower sequence: AT4G17740.2 (Arabidopsis thaliana), 5'ss of exon 10
AGGGGTGATTGTGTATATTTGTGATAGTCGTGGTGTTCGAGATATACTTGATACAGATGGAAGTAGTGCACTAGCAACTTCAGAACCCCTGGTTGTACTGgtatgtttttgctttcttctgttgcacagtaatagtattgagtagagttggcccaaatgc-atggtaggta--aatatgatagttctcattttattttcatgg
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AGGAGTGATTGTGTATATTTGCGATAGTCGAGGTGTTAGAGATATATATGATACTGATGGAAGCAATGCTATAGCAACCTCTGAGCCTCTTGCCGTTCTTgtatgagcttccatccttcctttcctcaaatctagtccttattgtaatctg--taaatgccatgaaagatttcattctcaca-caatctttctcttttccag-
upper sequence: GLYMA20G34110.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv05s0077g00060.t01 (Vitis vinifera), 5'ss of exon 11
AGGGGTGATTGTGTATATTTGTGATAGTCGTGGTGTTCGAGATATACTTGATACAGATGGAAGTAGTGCACTAGCAACTTCAGAACCCCTGGTTGTACTGgtatgtttttgctttcttctgttgcacagtaatagtattgagtagagttggcccaaatgcatggtaggtaaatatgatagttctcattttattttcatgg-------
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AGGTGTAATTGTGTATATTTGTGATGGTCGTGGTATTCGTGATATATATGACACAGATGGAAGCAGTGTAGTAGCAGCTTCAGAACCTCTGGCTGTGCTGgtatgcttt--cttatttcctaccagtttcaatagaccca--caaagctaatttcaaagtgtgat--gcaaatg-aacggtacccatgttattaacatggctgagagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151398652|gb|EV268523.1|EV268523EST: ATACAGATGGAAGTAGTGCACTAGCAACTTCAGAACCCCTGGTTGTACTG GTAAACAAGGGAACTGCAAGTGCAAGCGAAATATTAGCTGGTGCATTGAAA
genomic: ATACAGATGGAAGTAGTGCACTAGCAACTTCAGAACCCCTGGTTGTACTGgtatgttttt ... cctgtatcagGTAAACAAGGGAACTGCAAGTGCAAGCGAAATATTAGCTGGTGCATTGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGGGTGATTGTGTATATTTGTGATAGTCGTGGTGTTCGAGATATACTTGATACAGATGGAAGTAGTGCACTAGCAACTTCAGAACCCCTGGTTGTACTGgtatgtttttgctttcttctgttgcacagtaatagtattgagtagagttggcccaaatgcatggtaggtaaatatgatagttctcattttattttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG