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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttactattagataatgtgtaagtcaattagtcactccatgtttctttgcttaaacttgaaatctggttttccattcagGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTTTGGAAGAAGACCTGCTGGTTTCCGATCTAGGAGGCCTTTCATGCCTGCTCCATTCT

Basic information

species Glycine max
transcript GLYMA20G34100.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297746|gb|FG989607.1|FG989607
EST:     AGAATGCTCTCCTGTTAAATGAATCAGAATTACATGGTCGACAACTGAAG                         GTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTTTGGAAGA
genomic: AGAATGCTCTCCTGTTAAATGAATCAGAATTACATGGTCGACAACTGAAGgtctttacta ... ttccattcagGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTTTGGAAGA
EST: gi|254323743|gb|GR836082.1|GR836082
EST:     AGAATGCTCTCCTGTTAAATGAATCAGAATTACATGGTCGACAACTGAAG                         GTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTTTGGAAGA
genomic: AGAATGCTCTCCTGTTAAATGAATCAGAATTACATGGTCGACAACTGAAGgtctttacta ... ttccattcagGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTTTGGAAGA
EST: gi|151412042|gb|EV281854.1|EV281854
EST:     AGAATGCTCTCCTGTTAAATGAATCAGAATTACATGGTCGACAACTGAAG                         GTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTTTGGAAGA
genomic: AGAATGCTCTCCTGTTAAATGAATCAGAATTACATGGTCGACAACTGAAGgtctttacta ... ttccattcagGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTTTGGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattagtcactccatgtttctttgcttaaacttgaaatctggttttccattcagGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTTTGGAAGAAGACCTGCTGGTTTCCGATCTAGGAGGCCTTTCATGCCTGCTCCATTCT
                                           ttttccattc  CT-rich tract
                          ttaaactt  TA-rich tract