1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagggtttggtgttaggttaagttacttttctctctctgtctctctccacagtattaaatcaacgagtatcgtcaaattgttagGAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCGCCCTACGCGAAATGCAGGCAAAGGTTGAGAAAGAGATGGGCGCTGTTC
species | Glycine max |
transcript | GLYMA20G34100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGACGCCGAACAGCAAGACGAGCAACTTGCCCCCAATCACACAAACAAG GAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCEST: gi|192297746|gb|FG989607.1|FG989607
genomic: CAGACGCCGAACAGCAAGACGAGCAACTTGCCCCCAATCACACAAACAAGgttagggttt ... aaattgttagGAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGC
EST: CAGACGCCGAACAGCAAGACGAGCAACTTGCCCCCAATCACACAAACAAG GAACTGGAGGACATGGAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCEST: gi|254323743|gb|GR836082.1|GR836082
genomic: CAGACGCCGAACAGCAAGACGAGCAACTTGCCCCCAATCACACAAACAAGgttagggttt ... aaattgttagGAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGC
EST: CAGACGCCGAACAGCAAGACGAGCAACTTGCCCCCAATCACACAAACAAG GAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCEST: gi|151412042|gb|EV281854.1|EV281854
genomic: CAGACGCCGAACAGCAAGACGAGCAACTTGCCCCCAATCACACAAACAAGgttagggttt ... aaattgttagGAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGC
EST: CAGACGCCGAACAGCAAGACGAGCAACTTGCCCCCAATCACACAAACAAG GAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGC
genomic: CAGACGCCGAACAGCAAGACGAGCAACTTGCCCCCAATCACACAAACAAGgttagggttt ... aaattgttagGAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGC
tctctctctgtctctctccacagtattaaatcaacgagtatcgtcaaattgttagGAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCGCCCTACGCGAAATGCAGGCAAAGGTTGAGAAAGAGATGGGCGCTGTTC
tattaaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagggtttggtgttaggttaagttacttttctctctctgtctctctccacagtattaaatcaacgagtatcgtcaaattgttagGAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCGCCCTACGCGAAATGCAGGCAAAGGTTGAGAAAGAGATGGGCGCTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT