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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatttagcaaaagcctctactagtattcctcactccactaatgtgtttgcttttactatgttattttgtggatacctgcattagttttatttgtagtaggtagtaactactatagtgtttctatttttatttgttgattcctagGACATAAAGGTATCTGCTGAGTCAGACCTGCGACACCATGTTTCCCTTGTTGTCCATCCTATGCAGCAG

Basic information

species Glycine max
transcript GLYMA20G33940.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209728228|gb|BW651663.1|BW651663
EST:     ACACGAAGACTGAAAGAATCCATATCACAAATATATTCTAAACTTGAG                         GACATAAAGGTATCTGCTGAGTCAGACCTGCGACACCATGTTTCCCTTGTT
genomic: ACACGAAGACTGAAAGAATCCATATCACAAATATATTCTAAACTTGAGgtatgcattt ... tgattcctagGACATAAAGGTATCTGCTGAGTCAGACCTGCGACACCATGTTTCCCTTGTT
EST: gi|13791165|gb|BG653756.1|BG653756
EST:     ACACGAAGACTGAAAGAATCCATATCACAAATATATTCTAAACTTGAG                         GACATAAAGGTATCTGCTGAGTCAGACCTGCGACACCATGTTTCCCTTGTT
genomic: ACACGAAGACTGAAAGAATCCATATCACAAATATATTCTAAACTTGAGgtatgcattt ... tgattcctagGACATAAAGGTATCTGCTGAGTCAGACCTGCGACACCATGTTTCCCTTGTT
EST: gi|209728202|gb|BW651637.1|BW651637
EST:     ACACGAAGACTGAAAGAATCCATATCACAAATATATTCTAAACTTGAG                         GACATAAAGGTATCTGCTGAGTCAGACCTGCGACACCATGTTTCCCTTGTT
genomic: ACACGAAGACTGAAAGAATCCATATCACAAATATATTCTAAACTTGAGgtatgcattt ... tgattcctagGACATAAAGGTATCTGCTGAGTCAGACCTGCGACACCATGTTTCCCTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtagtaggtagtaactactatagtgtttctatttttatttgttgattcctagGACATAAAGGTATCTGCTGAGTCAGACCTGCGACACCATGTTTCCCTTGTTGTCCATCCTATGCAGCAG
                                                ttcct  CT-rich tract
                     tatagtgtttctattt  TA-rich tract