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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgtggttgacttttttcttgttcttttcccttacattcacatggagcaaattcttatatcattccactatacagAATGTGATGGGGTTGTAGATGAGGAGAGACAAAACAGAATTTCTAAGATGACCCTGATTGATGATCTTCAGGCACAAGATAATCATCCGTATGCACCACT

Basic information

species Glycine max
transcript GLYMA20G33940.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7684974|gb|AW755622.1|AW755622
EST:     TGGAACACCCAAGAACAGTAGCAGAAATTCTTGCTCGGAGAAAACAGG                         AATGTGATGGGGTTGTAGATGAGGAGAGACAAAACAGAATTTCTAAGATGA
genomic: TGGAACACCCAAGAACAGTAGCAGAAATTCTTGCTCGGAGAAAACAGGgttagtgtgg ... cactatacagAATGTGATGGGGTTGTAGATGAGGAGAGACAAAACAGAATTTCTAAGATGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttttcccttacattcacatggagcaaattcttatatcattccactatacagAATGTGATGGGGTTGTAGATGAGGAGAGACAAAACAGAATTTCTAAGATGACCCTGATTGATGATCTTCAGGCACAAGATAATCATCCGTATGCACCACT
        cccttac  putative branch site (score: 3)
                                       tcattcc  putative PPT
                            aaattcttatatcatt  TA-rich tract