1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTCCAACCTGATAAAGAACCTGATTTGGATGCAGAACTTAACTTACCTCCAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAGgtataatgttttgctccttgtatattctgctgcacttttgtagttgttaactgtacttaaaatgagggggttggtttggaggggggacttagtcaagtct...
species | Glycine max |
transcript | GLYMA20G33630.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAG ACTGAGGATGAGCTGGGTTTACCTGCTGTCCCTCAGGCATCCATACGTGGTEST: gi|254320041|gb|GR830957.1|GR830957
genomic: CAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAGgtataatgtt ... atgctgacagACTGAGGATGAGCTGGGTTTACCTGCTGTCCCTCAGGCATCCATACGCGGT
EST: CAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAG ACTGAGGATGAGCTGGGTTTACCTGCTGTCCCTCAGGCATCCATACGCGGTEST: gi|151397618|gb|EV267491.1|EV267491
genomic: CAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAGgtataatgtt ... atgctgacagACTGAGGATGAGCTGGGTTTACCTGCTGTCCCTCAGGCATCCATACGCGGT
EST: CAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAG ACTGAGGATGAGCTGGGTTTACCTGCTGTCCCTCAG-CATCCATACGTGGTEST: gi|58024021|gb|CX710762.1|CX710762
genomic: CAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAGgtataatgtt ... atgctgacagACTGAGGATGAGCTGGGTTTACCTGCTGTCCCTCAGGCATCCATACGCGGT
EST: CAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAG ACTGAGGATGAGCTGGGTTTACCTGCTGTCCCTCAGGCATCCATACGCGGTEST: gi|254325619|gb|GR838500.1|GR838500
genomic: CAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAGgtataatgtt ... atgctgacagACTGAGGATGAGCTGGGTTTACCTGCTGTCCCTCAGGCATCCATACGCGGT
EST: CAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAG ACTGAGGATGAGCTGGGTTTACCTGCTGTCCCTCAGGCATCCATACGCGGT
genomic: CAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAGgtataatgtt ... atgctgacagACTGAGGATGAGCTGGGTTTACCTGCTGTCCCTCAGGCATCCATACGCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCCAACCTGATAAAGAACCTGATTTGGATGCAGAACTTAACTTACCTCCAGCTCCAACAGGACAAACAGCTGTGCCACCTGGCAGATCCAATGCGCAGgtataatgttttgctccttgtatattctgctgcacttttgtagttgttaactgtacttaaaatgagggggttggtttggaggggggacttagtcaagtct
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggggg